Factsheet for PGSC0003DMT400052797

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007200.2.1	Tomato	unclear	99.07	99.07
PGSC0003DMT400067515	Potato	nucleus	77.67	75.91
KRH28185	Soybean	cytosol, golgi, nucleus	66.05	64.84
KRH57501	Soybean	plasma membrane	60.47	61.61
CDY40565	Canola	cytosol	61.86	61.01
CDY28969	Canola	cytosol	61.86	61.01
Bra017499.1-P	Field mustard	cytosol	62.33	60.91
CDY43438	Canola	cytosol	62.33	60.91
KRH04206	Soybean	cytosol	62.79	60.81
CDY33519	Canola	cytosol	61.4	60.55
CDX77746	Canola	cytosol	61.4	60.55
Bra022110.1-P	Field mustard	cytosol	61.4	60.55
CDY25982	Canola	cytosol	61.86	60.45
Bra022111.1-P	Field mustard	cytosol	61.86	60.45
AT5G47180.1	Thale cress	cytosol	60.93	59.55
Bra024958.1-P	Field mustard	cytosol	60.0	59.17
KRH77304	Soybean	plasma membrane, vacuole	65.58	56.63
GSMUA_Achr11P...	Banana	cytosol	57.21	53.48
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	53.95	50.0
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	53.95	50.0
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	53.95	50.0
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	53.02	48.93
Os10t0549100-01	Rice	plasma membrane	51.63	47.64
Os02t0652550-00	Rice	cytosol	54.42	43.82
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	41.86	42.45
HORVU6Hr1G062050.9	Barley	mitochondrion	55.35	40.89
PGSC0003DMT400066797	Potato	cytosol	43.26	38.75
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	54.42	38.74
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	40.0	37.89
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	53.49	37.1
Zm00001d014260_P001	Maize	plastid	30.7	37.08
PGSC0003DMT400076826	Potato	cytosol	10.23	36.67
EES05798	Sorghum	plastid	53.02	35.19
PGSC0003DMT400066920	Potato	cytosol	39.53	31.84
VIT_00s0287g00080.t01	Wine grape	extracellular	44.19	27.3
PGSC0003DMT400057834	Potato	cytosol	36.74	25.0
PGSC0003DMT400027619	Potato	cytosol	40.93	24.79
TraesCS2B01G214400.1	Wheat	mitochondrion	30.7	24.63

Protein Annotations

EntrezGene:102591742	Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1BTZ2	InterPro:MSP_dom	PFAM:PF00635
EnsemblPlantsGene:PGSC0003DMG400020490	PGSC:PGSC0003DMG400020490	EnsemblPlants:PGSC0003DMT400052797	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002965148	InterPro:VAP
RefSeq:XP_006362476.1	RefSeq:XP_006362477.1	RefSeq:XP_015158504.1	:	:	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020490]

Coordinates

chr8:+:996002..1002607

Molecular Weight (calculated)

24315.0 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.451

Length

215 amino acids

Sequence
(BLAST)

001: MSAGATNQLI SVSPPELKFQ FELDKQSYCD LKVTNSTDQC VAFKVKTTSP KKYFVRPNTG IIQPWDSGFI RVTLQAQKEY PADMQCKDKF LLQSAIVNND
101: TDELPPDTFN KDGGRTVEEC KLRVVYMSSH SSPGPYEDVF RQSSDFTSNQ ALQRIKDERD AAVRQTQQLI QDLEMMKRRR SRNDPGFSLR FAIVVGVIGL
201: MVGFLLKLLS SPSVE

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.