Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 98.33 | 98.33 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 72.92 | 73.22 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 67.08 | 67.93 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 67.08 | 67.36 |
| Bra000978.1-P | Field mustard | cytosol | 65.0 | 66.1 |
| CDX91914 | Canola | cytosol | 65.0 | 66.1 |
| CDX74330 | Canola | cytosol | 64.17 | 65.25 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 54.58 | 62.68 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 61.25 | 61.0 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 60.42 | 60.92 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 60.42 | 60.92 |
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 60.0 | 60.5 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 60.0 | 60.5 |
| KXG24454 | Sorghum | cytosol | 60.42 | 60.17 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 59.58 | 60.08 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 59.17 | 59.66 |
| Os08t0155100-01 | Rice | plasma membrane | 58.75 | 59.49 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 52.5 | 58.33 |
| PGSC0003DMT400032484 | Potato | cytosol, nucleus, plasma membrane | 51.25 | 58.02 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 56.67 | 56.67 |
| Os02t0661900-02 | Rice | cytosol | 24.17 | 54.72 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 48.33 | 51.1 |
| PGSC0003DMT400066920 | Potato | cytosol | 53.75 | 48.31 |
| TraesCS6D01G229800.1 | Wheat | cytosol | 47.08 | 48.29 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 46.67 | 47.86 |
| TraesCS6A01G247700.1 | Wheat | cytosol | 46.67 | 47.86 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 47.92 | 47.52 |
| TraesCS2D01G409200.1 | Wheat | cytosol, plastid | 47.92 | 47.52 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 46.25 | 47.44 |
| TraesCS2A01G412000.1 | Wheat | cytosol, plastid | 47.08 | 46.69 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 46.25 | 45.49 |
| PGSC0003DMT400067515 | Potato | nucleus | 41.67 | 45.45 |
| PGSC0003DMT400076826 | Potato | cytosol | 11.25 | 45.0 |
| KXG26858 | Sorghum | cytosol, plastid | 44.58 | 43.85 |
| PGSC0003DMT400052797 | Potato | cytosol | 38.75 | 43.26 |
| HORVU2Hr1G097220.19 | Barley | plastid | 44.17 | 42.91 |
| EES07504 | Sorghum | plastid | 44.17 | 39.85 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 42.5 | 38.78 |
| PGSC0003DMT400057834 | Potato | cytosol | 40.0 | 30.38 |
| PGSC0003DMT400027619 | Potato | cytosol | 44.58 | 30.14 |
Protein Annotations
| EntrezGene:102605522 | Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M1CG73 | InterPro:MSP_dom | PFAM:PF00635 |
| EnsemblPlantsGene:PGSC0003DMG401025971 | PGSC:PGSC0003DMG401025971 | EnsemblPlants:PGSC0003DMT400066797 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF43 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0002962747 | InterPro:VAP |
| RefSeq:XP_006347892.1 | SEG:seg | : | : | : | : |
Description
Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG401025971]
Coordinates
chr1:-:70282144..70289068
Molecular Weight (calculated)
26361.6 Da
IEP (calculated)
8.594
GRAVY (calculated)
-0.399
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTGEFINIY PTELKFPFEL RKQSACSMQL SNKTDQYIAF KVKTTNPKKY CVRPNAGVVL PGSSCNVTVT MQAQKEAPPD MQCKDKFLIQ SAIAPTGTTN
101: KDVTPEIFNR EDGKVIDEFK LRVVYVPANP PSPVPEGSEE GGSPRTSLTE DDSKSTSLPE AVSRSLEESK AKSSPSEAWS LISRLTDEKA SALQQNQKLR
201: QELELVRKEI NKSNAGGVSM LFVVLIGLIG LLVGYLIKKT
101: KDVTPEIFNR EDGKVIDEFK LRVVYVPANP PSPVPEGSEE GGSPRTSLTE DDSKSTSLPE AVSRSLEESK AKSSPSEAWS LISRLTDEKA SALQQNQKLR
201: QELELVRKEI NKSNAGGVSM LFVVLIGLIG LLVGYLIKKT
001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
Arabidopsis Description
PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.