CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0554200-02	Rice	cytosol, nucleus, plastid	70.9	70.9
TraesCS2B01G430600.1	Wheat	cytosol, plastid	69.67	70.25
TraesCS2D01G409200.1	Wheat	cytosol, plastid	69.26	69.83
TraesCS2A01G412000.1	Wheat	cytosol, plastid	69.26	69.83
HORVU2Hr1G097220.19	Barley	plastid	56.56	55.87
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	51.23	52.52
GSMUA_Achr7P07100_001	Banana	cytosol	48.77	50.0
Bra000978.1-P	Field mustard	cytosol	47.13	48.73
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	47.54	48.54
CDX74330	Canola	cytosol	46.72	48.31
CDX91914	Canola	cytosol	46.72	48.31
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	45.08	46.03
EES07504	Sorghum	plastid	50.0	45.86
PGSC0003DMT400066797	Potato	cytosol	43.85	44.58
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	43.44	44.17
KXG24454	Sorghum	cytosol	43.03	43.57
EES12559	Sorghum	cytosol	40.98	40.16
EES14570	Sorghum	cytosol, nucleus, plasma membrane	39.75	39.75
KXG31128	Sorghum	cytosol	35.66	38.67
EER91402	Sorghum	cytosol	38.93	34.93
Solyc08g007390.2.1	Tomato	unclear	26.23	31.84
OQU79125	Sorghum	cytosol	19.67	25.0
EES05798	Sorghum	plastid	31.97	24.07
KXG21863	Sorghum	cytosol	34.84	23.48
EES04183	Sorghum	cytosol	35.66	23.08

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1B6PMF3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KXG26858	ProteinID:KXG26858	ProteinID:KXG26858.1	InterPro:MSP_dom
PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF54	InterPro:PapD-like_sf
EnsemblPlantsGene:SORBI_3006G172300	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00081AE1D0	InterPro:VAP	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:52834132..52837670

Molecular Weight (calculated)

27703.6 Da

IEP (calculated)

6.363

GRAVY (calculated)

-0.232

Length

244 amino acids

Sequence
(BLAST)

001: MGSTLLRVYP SELKIPYEVK KQRSCCMELT NRTGQYVAFK VKTTNPRKYS VRHACGILLP RSSCNLTVTM QAPMEMLSDH HCKDKFLVQS VVVRDGATMK
101: DFLPELFVKA PGRVIEEFKL RVVYVAANPP SPVPEEEEEE DSSPRSEVIV CEEKRSHVFN AAPTYIRASG EELSCAEVTS VKSRMAEEKE CAIAVEEKLN
201: LQYKMELLEE TRSSQQQEGF SLMFVVFVFM SSVFIGHLMN DIKV

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.