Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- peroxisome 1
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000978.1-P | Field mustard | cytosol | 85.36 | 86.44 |
| CDX74330 | Canola | cytosol | 84.52 | 85.59 |
| CDX91914 | Canola | cytosol | 84.52 | 85.59 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 69.46 | 69.46 |
| PGSC0003DMT400066797 | Potato | cytosol | 67.36 | 67.08 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 66.53 | 66.25 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 63.18 | 63.71 |
| Os02t0661900-02 | Rice | cytosol | 27.2 | 61.32 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 60.67 | 60.92 |
| KXG24454 | Sorghum | cytosol | 59.83 | 59.34 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 59.41 | 58.92 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 58.58 | 58.82 |
| Os08t0155100-01 | Rice | plasma membrane | 57.74 | 58.23 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 51.88 | 57.41 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 56.9 | 57.14 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 49.79 | 56.94 |
| AT2G45140.1 | Thale cress | cytosol | 56.9 | 56.9 |
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 56.07 | 56.3 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 56.07 | 56.3 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 55.23 | 55.46 |
| AT3G60600.1 | Thale cress | cytosol | 58.16 | 54.3 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 53.56 | 53.33 |
| AT2G23830.1 | Thale cress | cytosol | 33.05 | 53.02 |
| KXG26858 | Sorghum | cytosol, plastid | 48.54 | 47.54 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 46.44 | 47.44 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 46.03 | 47.01 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 47.7 | 46.72 |
| TraesCS2D01G409200.1 | Wheat | cytosol, plastid | 47.28 | 46.69 |
| TraesCS6A01G247700.1 | Wheat | cytosol | 45.61 | 46.58 |
| TraesCS6D01G229800.1 | Wheat | cytosol | 45.61 | 46.58 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 46.86 | 46.28 |
| TraesCS2A01G412000.1 | Wheat | cytosol, plastid | 46.44 | 45.87 |
| AT5G47180.1 | Thale cress | cytosol | 40.59 | 44.09 |
| HORVU2Hr1G097220.19 | Barley | plastid | 43.1 | 41.7 |
| EES07504 | Sorghum | plastid | 45.19 | 40.6 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 44.35 | 40.3 |
| AT1G08820.3 | Thale cress | cytosol | 44.77 | 27.72 |
| AT1G51270.3 | Thale cress | cytosol | 48.54 | 18.21 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:828017 | UniProt:A0A178V0H0 | ProteinID:AAC19312.1 | ProteinID:AEE81833.1 |
| ArrayExpress:AT4G00170 | EnsemblPlantsGene:AT4G00170 | RefSeq:AT4G00170 | TAIR:AT4G00170 | RefSeq:AT4G00170-TAIR-G | EnsemblPlants:AT4G00170.1 |
| TAIR:AT4G00170.1 | EMBL:AY087270 | EMBL:BT001917 | ProteinID:CAB80775.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom |
| RefSeq:NP_567153.1 | ProteinID:OAO99243.1 | PFAM:PF00635 | PIRSF:PIRSF019693 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF43 | InterPro:PapD-like_sf | UniProt:Q84WW5 |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI000000BD42 | InterPro:VAP | SEG:seg | : |
Description
PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
Coordinates
chr4:-:69983..72217
Molecular Weight (calculated)
26375.8 Da
IEP (calculated)
7.213
GRAVY (calculated)
-0.307
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.