Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 79.32 | 78.99 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 79.32 | 78.99 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 79.32 | 78.99 |
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 78.06 | 77.73 |
| KXG24454 | Sorghum | cytosol | 78.06 | 76.76 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 76.37 | 75.1 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 65.4 | 65.4 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.4 | 64.85 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 54.43 | 61.72 |
| PGSC0003DMT400066797 | Potato | cytosol | 59.49 | 58.75 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 58.65 | 57.92 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 52.74 | 57.87 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 58.23 | 57.74 |
| Bra000978.1-P | Field mustard | cytosol | 56.96 | 57.2 |
| CDX91914 | Canola | cytosol | 56.96 | 57.2 |
| CDX74330 | Canola | cytosol | 56.12 | 56.36 |
| Os02t0661900-02 | Rice | cytosol | 24.89 | 55.66 |
| Os08t0156700-01 | Rice | plasma membrane | 56.54 | 55.14 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 54.85 | 54.17 |
| Os04t0534400-01 | Rice | cytosol | 55.27 | 52.4 |
| Os02t0643000-01 | Rice | plasma membrane | 49.37 | 45.17 |
| Solyc08g007390.2.1 | Tomato | unclear | 36.29 | 42.79 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 43.04 | 41.8 |
| Os10t0507600-01 | Rice | cytosol, plasma membrane | 38.82 | 38.33 |
| Os10t0549100-01 | Rice | plasma membrane | 35.02 | 35.62 |
| Os04t0369000-01 | Rice | cytosol, plasma membrane | 19.83 | 34.31 |
| Os02t0652550-00 | Rice | cytosol | 36.29 | 32.21 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 44.73 | 27.89 |
| Os05t0373000-01 | Rice | cytosol | 41.77 | 20.75 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:4344689 | EMBL:AK069865 | EMBL:AK104886 | ProteinID:BAC99391.1 |
| ProteinID:BAF22933.1 | ProteinID:BAT03881.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | EnsemblPlantsGene:Os08g0155100 | EnsemblPlants:Os08t0155100-01 | PFAM:PF00635 |
| PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF43 | InterPro:PapD-like_sf | UniProt:Q6ZJR5 |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI00001D8CD0 | InterPro:VAP | RefSeq:XP_015651124.1 | SEG:seg |
Description
PapD-like domain containing protein. (Os08t0155100-01)
Coordinates
chr8:+:3171594..3175339
Molecular Weight (calculated)
26141.3 Da
IEP (calculated)
7.946
GRAVY (calculated)
-0.344
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASFLEIQP SELSFPFELL KQSSCSMQLT NKTDHYVAFK VKTTNPKQYC VRPNIGVVLP GSTCDVTVTM QAQREAPPDM QCKDKFLVQS VAAENGATTQ
101: DISAEMFNKV AGKVVEEFKL RVVYVPTTTS SAMPEDSEQG SSARPFAQEN GIHNSTMPQP VFRSSAEPTK ERPTEPSSMI SKLNEENRVA IQQNQKLRHE
201: LELLRKESSK SSGGFSLTFL AIVGLLGIIV GYILKKT
101: DISAEMFNKV AGKVVEEFKL RVVYVPTTTS SAMPEDSEQG SSARPFAQEN GIHNSTMPQP VFRSSAEPTK ERPTEPSSMI SKLNEENRVA IQQNQKLRHE
201: LELLRKESSK SSGGFSLTFL AIVGLLGIIV GYILKKT
001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
Arabidopsis Description
PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.