Factsheet for Zm00001d024588_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24454	Sorghum	cytosol	92.95	92.95
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	79.25	80.25
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	78.01	78.99
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	78.01	78.99
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	77.18	78.15
Os08t0155100-01	Rice	plasma membrane	75.1	76.37
GSMUA_Achr1P20230_001	Banana	cytosol	66.81	67.93
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	63.9	64.44
GSMUA_Achr6P36770_001	Banana	cytosol	54.36	62.68
PGSC0003DMT400066797	Potato	cytosol	61.0	61.25
GSMUA_Achr7P06650_001	Banana	cytosol	54.36	60.65
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	60.17	60.42
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	58.92	59.41
Bra000978.1-P	Field mustard	cytosol	57.68	58.9
CDX91914	Canola	cytosol	57.68	58.9
CDX74330	Canola	cytosol	56.85	58.05
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	55.19	55.42
Zm00001d049553_P001	Maize	plasma membrane	53.94	53.28
Zm00001d051288_P001	Maize	cytosol	46.47	49.78
Zm00001d017390_P001	Maize	cytosol	46.47	49.78
Solyc08g007390.2.1	Tomato	unclear	37.76	45.27
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	53.94	43.62
Zm00001d032507_P001	Maize	cytosol, golgi, plasma membrane	48.13	42.8
Zm00001d051383_P001	Maize	cytosol, plastid	43.98	40.3
Zm00001d036342_P001	Maize	cytosol	35.27	34.0
Zm00001d014260_P001	Maize	plastid	24.48	33.15
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	37.76	30.13
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	37.76	29.35
Zm00001d011904_P001	Maize	cytosol	43.57	26.85
Zm00001d042180_P002	Maize	cytosol	43.15	25.94
Zm00001d010495_P002	Maize	cytosol	40.25	25.53
Zm00001d048612_P001	Maize	cytosol	24.9	8.47

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:AQK41535.1	EMBL:BT061527	UniProt:C0HGS1	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom
PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43	InterPro:PapD-like_sf
SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0001948AF5	InterPro:VAP	EnsemblPlantsGene:Zm00001d024588	EnsemblPlants:Zm00001d024588_P001
EnsemblPlants:Zm00001d024588_T001	SEG:seg	:	:	:	:

Description

Vesicle-associated protein 1-3

Coordinates

chr10:-:79474689..79478403

Molecular Weight (calculated)

26279.6 Da

IEP (calculated)

7.930

GRAVY (calculated)

-0.231

Length

241 amino acids

Sequence
(BLAST)

001: MSGGGSVSFL EIQPSELAFP FEIMRQSSCS MQLTNKTDHY VAFKVKTTNP KQYCVRPNIG VVLPGSTCNV TVTMQAQKAS PPDMQCKDKF LVQSVVAENG
101: VTAQDINAAM FNKEPGKVVD EFKLRVVYVP TTMPNPIPEE SELGSSTPSF SQENGIDHSM TPLSVSRSSA ETAKEKPSEA TSVISKLTEE KMSAVQQNQK
201: LRQELELLRK ESSKTGGGFS ITFLFVVGLL GIVVGYILKR T

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.