Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017390_P001 | Maize | cytosol | 93.33 | 93.33 |
| KXG31128 | Sorghum | cytosol | 92.89 | 92.89 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 68.89 | 67.98 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 68.44 | 67.54 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 67.56 | 66.67 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 67.11 | 66.23 |
| Os02t0643000-01 | Rice | plasma membrane | 70.67 | 61.39 |
| Zm00001d049553_P001 | Maize | plasma membrane | 59.56 | 54.92 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 57.33 | 53.97 |
| AT2G23830.1 | Thale cress | cytosol | 35.56 | 53.69 |
| Solyc01g090910.2.1 | Tomato | nucleus | 55.56 | 53.65 |
| Solyc10g018350.1.1 | Tomato | cytosol | 56.44 | 53.36 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 56.44 | 53.14 |
| KRH76164 | Soybean | endoplasmic reticulum | 56.89 | 53.11 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 56.0 | 52.72 |
| KRH65384 | Soybean | cytosol | 56.44 | 52.7 |
| Zm00001d036342_P001 | Maize | cytosol | 58.22 | 52.4 |
| CDY48365 | Canola | cytosol | 55.56 | 52.3 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 55.56 | 52.3 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.56 | 52.08 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 55.56 | 52.08 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.11 | 51.88 |
| AT2G45140.1 | Thale cress | cytosol | 54.22 | 51.05 |
| CDX71796 | Canola | cytosol | 53.78 | 50.84 |
| Bra003313.1-P | Field mustard | cytosol | 50.22 | 50.67 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 53.78 | 50.63 |
| CDY41153 | Canola | cytosol | 53.33 | 50.42 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 53.33 | 50.21 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 53.33 | 50.21 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 53.78 | 50.21 |
| Bra007547.1-P | Field mustard | cytosol | 52.89 | 50.0 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 52.44 | 48.96 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 49.33 | 48.9 |
| CDY57247 | Canola | cytosol | 51.56 | 48.33 |
| CDY56247 | Canola | cytosol | 51.56 | 48.33 |
| AT3G60600.1 | Thale cress | cytosol | 54.22 | 47.66 |
| Solyc06g034220.2.1 | Tomato | nucleus | 48.0 | 47.58 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 49.78 | 46.47 |
| GSMUA_Achr11P... | Banana | cytosol | 40.89 | 46.0 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 60.44 | 45.64 |
| PGSC0003DMT400066920 | Potato | cytosol | 53.78 | 45.32 |
| Bra035442.1-P | Field mustard | cytosol | 20.89 | 43.52 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 52.89 | 42.5 |
| Zm00001d032507_P001 | Maize | cytosol, golgi, plasma membrane | 50.22 | 41.7 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 17.33 | 38.24 |
| PGSC0003DMT400076826 | Potato | cytosol | 9.78 | 36.67 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 41.33 | 35.36 |
| Zm00001d014260_P001 | Maize | plastid | 26.22 | 33.15 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 39.11 | 29.14 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 40.0 | 29.03 |
| Zm00001d010495_P002 | Maize | cytosol | 43.56 | 25.79 |
| Zm00001d011904_P001 | Maize | cytosol | 41.78 | 24.04 |
| Zm00001d042180_P002 | Maize | cytosol | 40.89 | 22.94 |
| AT1G51270.3 | Thale cress | cytosol | 43.11 | 15.23 |
| Zm00001d048612_P001 | Maize | cytosol | 25.33 | 8.05 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ProteinID:AQK53959.1 | EMBL:BT088065 | UniProt:C4JB68 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom |
| PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF87 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0001A4C5FE | InterPro:VAP | EnsemblPlantsGene:Zm00001d051288 | EnsemblPlants:Zm00001d051288_P001 |
| EnsemblPlants:Zm00001d051288_T001 | SEG:seg | : | : | : | : |
Description
Vesicle-associated protein 1-1
Coordinates
chr4:-:151822045..151825605
Molecular Weight (calculated)
25213.6 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.295
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTESGELLG IDPVELRFPF ELNKQISCTL QLTNKTDKQV AFKVKTTSPK KYCVRPNNGM VAPRSKADVV VTMQAQRDVP PDMQCKDKFL VQSATVAKEV
101: VPKEVTGDMF TKDSGNVVEE VKLKVVYVAP SSSQSERFED GNLGSLSYQE ETKEPKESEK IITEPFALIS KLMEEKNSAI ELNNKVRQEL DFLRRDISRR
201: HGGFSLVLVL VVAILGILLG FLMKR
101: VPKEVTGDMF TKDSGNVVEE VKLKVVYVAP SSSQSERFED GNLGSLSYQE ETKEPKESEK IITEPFALIS KLMEEKNSAI ELNNKVRQEL DFLRRDISRR
201: HGGFSLVLVL VVAILGILLG FLMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.