Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 71.25 | 91.94 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 60.0 | 88.89 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 89.38 | 87.2 |
| EER92848 | Sorghum | extracellular | 85.0 | 86.62 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 83.75 | 85.35 |
| Os03t0149200-01 | Rice | extracellular | 73.75 | 75.16 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 71.88 | 73.25 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 71.88 | 73.25 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 71.88 | 73.25 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 70.62 | 71.97 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 67.5 | 69.23 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 67.5 | 68.79 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 66.88 | 68.59 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 63.75 | 64.56 |
| KRH32166 | Soybean | endoplasmic reticulum | 55.62 | 57.05 |
| Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 56.25 | 55.9 |
| KRH19536 | Soybean | endoplasmic reticulum | 54.38 | 55.77 |
| Solyc03g005470.2.1 | Tomato | plastid | 55.0 | 55.7 |
| KRH67349 | Soybean | plasma membrane | 54.38 | 55.41 |
| KRG95647 | Soybean | plasma membrane | 54.38 | 55.41 |
| Bra041032.1-P | Field mustard | extracellular | 53.75 | 55.13 |
| CDY49421 | Canola | extracellular | 53.12 | 54.49 |
| CDY12771 | Canola | extracellular | 53.12 | 54.49 |
| CDY47153 | Canola | endoplasmic reticulum | 53.75 | 54.43 |
| CDY12466 | Canola | endoplasmic reticulum | 53.75 | 54.43 |
| Bra039861.1-P | Field mustard | plasma membrane | 52.5 | 53.16 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 51.88 | 52.87 |
| AT4G14420.1 | Thale cress | plasma membrane | 51.88 | 52.53 |
| KRH34500 | Soybean | extracellular | 50.0 | 50.96 |
| KRG92302 | Soybean | extracellular | 50.0 | 50.96 |
| KRG90387 | Soybean | extracellular | 49.38 | 50.32 |
| KRH31721 | Soybean | endoplasmic reticulum | 48.75 | 49.68 |
| Bra030565.1-P | Field mustard | plasma membrane | 49.38 | 47.88 |
| CDY15499 | Canola | plasma membrane | 49.38 | 47.88 |
| CDY59304 | Canola | plasma membrane | 46.88 | 47.77 |
| Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 48.12 | 47.53 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 48.12 | 47.53 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 48.12 | 46.95 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 47.5 | 46.91 |
| AT1G04340.1 | Thale cress | plasma membrane | 46.25 | 46.54 |
| CDY32939 | Canola | plasma membrane | 45.62 | 46.5 |
| Bra027498.1-P | Field mustard | plasma membrane | 45.62 | 46.5 |
| AT5G43460.1 | Thale cress | extracellular | 44.38 | 46.1 |
| PGSC0003DMT400034860 | Potato | plastid | 49.38 | 42.93 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 41.88 | 42.68 |
| PGSC0003DMT400044245 | Potato | cytosol | 46.88 | 42.37 |
| VIT_05s0049g00210.t01 | Wine grape | plastid | 59.38 | 41.3 |
| Zm00001d025020_P001 | Maize | extracellular, golgi, plasma membrane | 61.88 | 40.91 |
| KRH73866 | Soybean | plastid | 32.5 | 34.9 |
| CDY10063 | Canola | plasma membrane | 38.75 | 34.25 |
| PGSC0003DMT400042097 | Potato | cytosol | 36.25 | 29.74 |
Protein Annotations
| EnsemblPlants:Zm00001d018662_P001 | EnsemblPlants:Zm00001d018662_T001 | EnsemblPlantsGene:Zm00001d018662 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF1 | PFAM:PF05514 | ProteinID:ONM51082.1 | SEG:seg |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000844C9CD | UniProt:A0A1D6HRG8 | MapMan:35.2 | : |
Description
HR-like lesion-inducing protein-related
Coordinates
chr7:-:2097870..2098352
Molecular Weight (calculated)
17415.7 Da
IEP (calculated)
10.704
GRAVY (calculated)
0.427
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVSFVGRV LFVAAFLLSA YQELNEFGAN GGPTSKAIQP KFNVFIKNVS AHLGVAVPHI ELKHVIAATI GLKGLGSLLF ILSSSLGAYL LLLYLALITP
101: IIHDFYNYDM EKAEFAGLFA KFTQDLALIG ALLFFLGMKN SIPKRQGGKK SPRRRRTRAA
101: IIHDFYNYDM EKAEFAGLFA KFTQDLALIG ALLFFLGMKN SIPKRQGGKK SPRRRRTRAA
001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
Arabidopsis Description
AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.