Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G415500.1 | Wheat | extracellular | 98.09 | 98.09 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 98.09 | 98.09 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 97.45 | 97.45 |
| Os03t0149200-01 | Rice | extracellular | 89.81 | 89.81 |
| EER92848 | Sorghum | extracellular | 79.62 | 79.62 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 78.34 | 78.85 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 77.71 | 77.71 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 77.07 | 77.56 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 52.87 | 76.85 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 80.25 | 76.83 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 77.07 | 76.58 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 75.16 | 75.16 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 73.25 | 71.88 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 56.69 | 71.77 |
| TraesCS2D01G029000.1 | Wheat | extracellular | 70.7 | 70.7 |
| KRH32166 | Soybean | endoplasmic reticulum | 64.97 | 65.38 |
| KRH19536 | Soybean | endoplasmic reticulum | 63.06 | 63.46 |
| KRH67349 | Soybean | plasma membrane | 62.42 | 62.42 |
| KRG95647 | Soybean | plasma membrane | 61.15 | 61.15 |
| Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 62.42 | 60.87 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 59.87 | 59.87 |
| CDY47153 | Canola | endoplasmic reticulum | 59.87 | 59.49 |
| CDY12466 | Canola | endoplasmic reticulum | 59.87 | 59.49 |
| Solyc03g005470.2.1 | Tomato | plastid | 59.24 | 58.86 |
| Bra039861.1-P | Field mustard | plasma membrane | 59.24 | 58.86 |
| CDY12771 | Canola | extracellular | 57.96 | 58.33 |
| Bra041032.1-P | Field mustard | extracellular | 57.32 | 57.69 |
| AT4G14420.1 | Thale cress | plasma membrane | 57.96 | 57.59 |
| CDY49421 | Canola | extracellular | 56.69 | 57.05 |
| CDY59304 | Canola | plasma membrane | 56.05 | 56.05 |
| Bra027498.1-P | Field mustard | plasma membrane | 54.78 | 54.78 |
| CDY32939 | Canola | plasma membrane | 54.78 | 54.78 |
| AT1G04340.1 | Thale cress | plasma membrane | 54.78 | 54.09 |
| AT5G43460.1 | Thale cress | extracellular | 52.87 | 53.9 |
| KRG92302 | Soybean | extracellular | 53.5 | 53.5 |
| Bra030565.1-P | Field mustard | plasma membrane | 56.05 | 53.33 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 54.78 | 53.09 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 55.41 | 53.05 |
| KRG90387 | Soybean | extracellular | 52.87 | 52.87 |
| CDY15499 | Canola | plasma membrane | 55.41 | 52.73 |
| Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 54.14 | 52.47 |
| KRH31721 | Soybean | endoplasmic reticulum | 52.23 | 52.23 |
| KRH34500 | Soybean | extracellular | 52.23 | 52.23 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 53.5 | 51.85 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 49.68 | 49.68 |
| PGSC0003DMT400044245 | Potato | cytosol | 54.14 | 48.02 |
| PGSC0003DMT400034860 | Potato | plastid | 54.14 | 46.2 |
| VIT_05s0049g00210.t01 | Wine grape | plastid | 66.88 | 45.65 |
| KRH73866 | Soybean | plastid | 38.22 | 40.27 |
| CDY10063 | Canola | plasma membrane | 42.04 | 36.46 |
| PGSC0003DMT400042097 | Potato | cytosol | 42.04 | 33.85 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G312900.1 | EnsemblPlantsGene:TraesCS4D01G312900 | InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF1 | PFAM:PF05514 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4D:-:479037685..479040181
Molecular Weight (calculated)
17308.4 Da
IEP (calculated)
10.184
GRAVY (calculated)
0.425
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVSFAGRV LFASVFLLSA YQEFTEFGTD GGPAAKNLEP KFNSFTKNIS VHLGVVVPHV ELKHVIAATI GLKGLGGLLF ILSSSFGAYL LALYLAFITP
101: VVYDFYNYDM EKAEFVQIFM KFTQNLALFG ALLFFLGMKN SVPKRQAKKK APKSKTT
101: VVYDFYNYDM EKAEFVQIFM KFTQNLALFG ALLFFLGMKN SVPKRQAKKK APKSKTT
001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
Arabidopsis Description
AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.