CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX92368
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43460.1	CDX67837	AT3G60600.1	21798944
AT5G43460.1	CDX71796	AT3G60600.1	21798944
AT5G43460.1	CDX89063	AT3G60600.1	21798944
AT5G43460.1	CDY41153	AT3G60600.1	21798944
AT5G43460.1	CDY48365	AT3G60600.1	21798944
AT5G43460.1	CDX70995	AT5G22290.1	21798944
AT5G43460.1	CDX88803	AT5G22290.1	21798944
AT5G43460.1	CDX92368	AT5G22290.1	21798944
AT5G43460.1	CDY09128	AT5G22290.1	21798944
AT5G43460.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027498.1-P	Field mustard	plasma membrane	96.82	96.82
CDY32939	Canola	plasma membrane	96.82	96.82
AT5G43460.1	Thale cress	extracellular	85.99	87.66
CDY60669	Canola	extracellular, plasma membrane, vacuole	85.35	82.72
CDY18220	Canola	extracellular, plasma membrane, vacuole	84.71	82.1
CDY15499	Canola	plasma membrane	84.71	80.61
CDX86640	Canola	extracellular, plasma membrane, vacuole	83.44	79.88
VIT_05s0049g00200.t01	Wine grape	extracellular	62.42	62.42
KRH31721	Soybean	endoplasmic reticulum	60.51	60.51
KRG92302	Soybean	extracellular	60.51	60.51
KRG90387	Soybean	extracellular	60.51	60.51
KRH34500	Soybean	extracellular	58.6	58.6
CDY10063	Canola	plasma membrane	66.88	58.01
TraesCS4A01G415500.1	Wheat	extracellular	57.32	57.32
GSMUA_Achr4P26720_001	Banana	extracellular	56.05	56.41
CDY12771	Canola	extracellular	56.05	56.41
CDY49421	Canola	extracellular	56.05	56.41
CDY47153	Canola	endoplasmic reticulum	56.69	56.33
CDY12466	Canola	endoplasmic reticulum	56.69	56.33
HORVU4Hr1G080140.1	Barley	extracellular	56.05	56.05
TraesCS4D01G312900.1	Wheat	extracellular	56.05	56.05
Solyc06g053660.2.1	Tomato	plasma membrane	56.05	56.05
Os03t0149200-01	Rice	extracellular	56.05	56.05
GSMUA_Achr2P04100_001	Banana	extracellular	56.05	55.7
TraesCS4B01G316300.1	Wheat	extracellular	55.41	55.41
GSMUA_Achr1P01370_001	Banana	extracellular	54.78	55.13
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	37.58	54.63
Os04t0181100-01	Rice	plasma membrane	54.14	54.14
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	54.14	54.14
OQU81217	Sorghum	extracellular	53.5	53.5
Os10t0445500-01	Rice	plasma membrane	53.5	53.16
GSMUA_Achr8P14320_001	Banana	plasma membrane	53.5	53.16
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	52.87	52.87
TraesCS2D01G029000.1	Wheat	extracellular	52.87	52.87
EER92848	Sorghum	extracellular	52.87	52.87
TraesCS2B01G040200.1	Wheat	extracellular	52.23	52.23
TraesCS2A01G026900.1	Wheat	extracellular	52.23	52.23
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	52.87	50.61
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	38.22	48.39
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	47.77	46.88
KRH73866	Soybean	plastid	36.31	38.26
PGSC0003DMT400042097	Potato	cytosol	44.59	35.9
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	52.87	34.3

Protein Annotations

EnsemblPlants:CDY59304	EnsemblPlantsGene:GSBRNA2T00025864001	GO:A0A078J1C7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF4	PFAM:PF05514	ProteinID:CDY59304	ProteinID:CDY59304.1
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000182AD03	UniProt:A0A078J1C7	MapMan:35.2	:

Description

BnaA06g40080DBnaA06g40080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1C7]

Coordinates

chrLK033748:+:38058..39281

Molecular Weight (calculated)

17149.3 Da

IEP (calculated)

10.264

GRAVY (calculated)

0.600

Length

157 amino acids

Sequence
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGVD GGPAATELAP KLHLAKSHLS SRLGVTLPSV EVKQVVAAII ALKGVGGLLF VIGNIFGAYL LAVYLAVFSP
101: ILYDFYNYGP EERHFSLLLT EFLQSVALFG ALLFFIGMKN STPTKRNLKR TPKPKAA

Best Arabidopsis Sequence Match ( AT5G43460.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDGGPA AKELAPKLDL VKAHLSSRLG VTLPKIEVRQ VVATIIALKG VGGLLFVIGN TFGAYLLASY LVVFGPILYD
101: FYNYGPQERH FSLLLTEFLQ SVALFGALLF FIGMKNSTPA KKNLKKRTPK PKAA

Arabidopsis Description

At5g43460/MWF20_18 [Source:UniProtKB/TrEMBL;Acc:Q9LSW5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.