Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
18260611
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0149200-01 | Rice | extracellular | 77.22 | 77.71 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 70.25 | 71.15 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 69.62 | 70.51 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 68.99 | 68.99 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 67.09 | 67.52 |
| Os04t0181100-01 | Rice | plasma membrane | 66.46 | 66.88 |
| KRH32166 | Soybean | endoplasmic reticulum | 61.39 | 62.18 |
| KRH67349 | Soybean | plasma membrane | 60.13 | 60.51 |
| KRH19536 | Soybean | endoplasmic reticulum | 59.49 | 60.26 |
| Bra041032.1-P | Field mustard | extracellular | 58.86 | 59.62 |
| KRG95647 | Soybean | plasma membrane | 58.86 | 59.24 |
| CDY12771 | Canola | extracellular | 58.23 | 58.97 |
| CDY49421 | Canola | extracellular | 58.23 | 58.97 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 58.23 | 58.6 |
| Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 59.49 | 58.39 |
| CDY12466 | Canola | endoplasmic reticulum | 58.23 | 58.23 |
| CDY47153 | Canola | endoplasmic reticulum | 58.23 | 58.23 |
| Bra039861.1-P | Field mustard | plasma membrane | 57.59 | 57.59 |
| AT4G14420.1 | Thale cress | plasma membrane | 56.96 | 56.96 |
| Solyc03g005470.2.1 | Tomato | plastid | 55.7 | 55.7 |
| CDY59304 | Canola | plasma membrane | 53.16 | 53.5 |
| CDY32939 | Canola | plasma membrane | 52.53 | 52.87 |
| Bra027498.1-P | Field mustard | plasma membrane | 52.53 | 52.87 |
| AT5G43460.1 | Thale cress | extracellular | 50.0 | 51.3 |
| Bra030565.1-P | Field mustard | plasma membrane | 53.16 | 50.91 |
| CDY15499 | Canola | plasma membrane | 53.16 | 50.91 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 51.9 | 50.62 |
| Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 51.9 | 50.62 |
| KRG92302 | Soybean | extracellular | 50.0 | 50.32 |
| AT1G04340.1 | Thale cress | plasma membrane | 50.63 | 50.31 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 51.9 | 50.0 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 50.63 | 49.38 |
| KRH31721 | Soybean | endoplasmic reticulum | 48.73 | 49.04 |
| KRG90387 | Soybean | extracellular | 48.73 | 49.04 |
| KRH34500 | Soybean | extracellular | 48.1 | 48.41 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 46.84 | 47.13 |
| PGSC0003DMT400044245 | Potato | cytosol | 51.9 | 46.33 |
| PGSC0003DMT400034860 | Potato | plastid | 50.0 | 42.93 |
| VIT_05s0049g00210.t01 | Wine grape | plastid | 60.13 | 41.3 |
| KRH73866 | Soybean | plastid | 34.18 | 36.24 |
| CDY10063 | Canola | plasma membrane | 40.51 | 35.36 |
| PGSC0003DMT400042097 | Potato | cytosol | 40.51 | 32.82 |
Protein Annotations
| EMBL:AK073158 | EnsemblPlants:Os10t0445500-01 | EnsemblPlantsGene:Os10g0445500 | EntrezGene:4348744 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF1 | PFAM:PF05514 | ProteinID:BAF26624.1 |
| ProteinID:BAT11068.1 | ProteinID:EEE51039.1 | RefSeq:XP_015614648.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00005E1EE4 | UniProt:Q0IXE1 | MapMan:35.2 | : | : | : |
Description
HR-like lesion-inducer family protein. (Os10t0445500-01)
Coordinates
chr10:+:16092694..16096748
Molecular Weight (calculated)
17241.3 Da
IEP (calculated)
10.288
GRAVY (calculated)
0.492
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFLSFAGRV LFAAAFLLSA YQEFSEFGVD GGPAAKALQP KFNTIVANIS TRTGLVVPHI ELKHIVAAMI SLKGLGGLLF ILSSSLGAYL LLFHLAFITP
101: VVHDFYNYDI ESAEFVQLFT KFAQNCALVG ALLFFLAMKN SIPKRQPNRK KAPKPKST
101: VVHDFYNYDI ESAEFVQLFT KFAQNCALVG ALLFFLAMKN SIPKRQPNRK KAPKPKST
001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
Arabidopsis Description
AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.