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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • golgi 5
  • plasma membrane 8
  • endoplasmic reticulum 5
  • vacuole 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra012880.1-P
Bra030540.1-P
Bra033415.1-P
Bra036850.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04340.1 Bra030540.1-P AT1G03630.1 21798944
AT1G04340.1 Bra033415.1-P AT1G03630.1 21798944
AT1G04340.1 Bra012880.1-P AT3G50910.1 21798944
AT1G04340.1 Bra036850.1-P AT3G50910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15499 Canola plasma membrane 99.39 99.39
Bra015305.1-P Field mustard extracellular, plasma membrane, vacuole 89.7 91.36
AT1G04340.1 Thale cress plasma membrane 87.27 90.57
Bra027498.1-P Field mustard plasma membrane 81.82 85.99
VIT_05s0049g00200.t01 Wine grape extracellular 58.79 61.78
KRG92302 Soybean extracellular 58.18 61.15
KRH34500 Soybean extracellular 57.58 60.51
KRH31721 Soybean endoplasmic reticulum 56.36 59.24
KRG90387 Soybean extracellular 56.36 59.24
TraesCS4A01G415500.1 Wheat extracellular 55.15 57.96
Solyc06g053660.2.1 Tomato plasma membrane 53.94 56.69
Os03t0149200-01 Rice extracellular 53.94 56.69
HORVU4Hr1G080140.1 Barley extracellular 53.94 56.69
Zm00001d032568_P001 Maize endoplasmic reticulum, extracellular, vacuole 36.97 56.48
Bra041032.1-P Field mustard extracellular 53.33 56.41
TraesCS4D01G312900.1 Wheat extracellular 53.33 56.05
TraesCS4B01G316300.1 Wheat extracellular 53.33 56.05
GSMUA_Achr2P04100_001 Banana extracellular 53.33 55.7
EER92848 Sorghum extracellular 52.73 55.41
GSMUA_Achr4P26720_001 Banana extracellular 52.12 55.13
Bra039861.1-P Field mustard plasma membrane 52.12 54.43
Zm00001d048402_P001 Maize extracellular, golgi, plasma membrane 51.52 54.14
Os04t0181100-01 Rice plasma membrane 50.91 53.5
OQU81217 Sorghum extracellular 50.91 53.5
GSMUA_Achr11P... Banana endoplasmic reticulum, extracellular, plasma membrane 50.91 53.5
GSMUA_Achr1P01370_001 Banana extracellular 50.3 53.21
Os10t0445500-01 Rice plasma membrane 50.91 53.16
Zm00001d027680_P003 Maize endoplasmic reticulum, extracellular, plasma membrane 52.73 53.05
TraesCS2D01G029000.1 Wheat extracellular 49.7 52.23
TraesCS2A01G026900.1 Wheat extracellular 49.09 51.59
TraesCS2B01G040200.1 Wheat extracellular 49.09 51.59
GSMUA_Achr8P14320_001 Banana plasma membrane 49.09 51.27
Zm00001d032483_P001 Maize endoplasmic reticulum, extracellular, vacuole 38.18 50.81
Zm00001d018662_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 47.88 49.38
KRH73866 Soybean plastid 36.36 40.27
PGSC0003DMT400042097 Potato cytosol 43.64 36.92
Zm00001d025020_P001 Maize extracellular, golgi, plasma membrane 50.91 34.71
Protein Annotations
MapMan:35.2EnsemblPlantsGene:Bra030565EnsemblPlants:Bra030565.1EnsemblPlants:Bra030565.1-PGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0016020GO:GO:0016021InterPro:HR_lesion
UniProt:M4EP45PFAM:PF05514PANTHER:PTHR31474PANTHER:PTHR31474:SF4SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI00025458A4SEG:seg::::
Description
AT1G04340 (E=9e-049) | lesion inducing protein-related
Coordinates
chrA08:+:21289622..21290721
Molecular Weight (calculated)
17939.1 Da
IEP (calculated)
10.337
GRAVY (calculated)
0.488
Length
165 amino acids
Sequence
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDFGSD GGPAAKELAP KLHLAKAHLS SRLGVALPDI EVKHVVWAIV GLKGLGGLLF VVGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP QDREFSLLFT EFLQSVALLG ALLFFIGMKN STTTSSSSSS AKRNLKKRTP KPKAA
Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Arabidopsis Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.