Factsheet for Bra030540.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006136.1-P
Bra006619.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra019049.1-P
Bra020182.1-P
Bra023354.1-P
Bra027174.1-P
Bra030034.1-P
Bra030540.1-P
Bra032817.1-P
Bra033415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	Bra030540.1-P	AT1G03630.1	21798944
AT1G03630.1	Bra033415.1-P	AT1G03630.1	21798944
AT1G03630.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G03630.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G03630.1	Bra027174.1-P	AT3G16310.1	21798944
AT1G03630.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G03630.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G03630.1	Bra014481.1-P	AT3G60600.1	21798944
AT1G03630.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G03630.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G03630.1	Bra019049.1-P	AT4G27440.1	21798944
AT1G03630.1	Bra006136.1-P	AT5G11980.1	21798944
AT1G03630.1	Bra023354.1-P	AT5G11980.1	21798944
AT1G03630.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G03630.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G03630.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15470	Canola	plastid	99.5	99.5
AT1G03630.1	Thale cress	plastid	94.47	93.77
Bra033415.1-P	Field mustard	plastid	93.22	92.75
VIT_12s0059g00270.t01	Wine grape	plastid	79.9	79.7
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	79.15	79.35
Solyc10g006900.2.1	Tomato	plastid	78.64	79.24
PGSC0003DMT400064369	Potato	plastid	79.15	79.15
PGSC0003DMT400039734	Potato	plastid	78.89	79.09
VIT_19s0014g03160.t01	Wine grape	plastid	77.89	78.28
PGSC0003DMT400047264	Potato	plastid	76.88	76.88
Zm00001d013937_P001	Maize	plastid	76.38	76.77
Solyc07g054210.2.1	Tomato	plastid	76.88	76.69
KRH27209	Soybean	nucleus, plastid	76.63	76.44
EER94008	Sorghum	plastid	75.63	76.4
Bra026349.1-P	Field mustard	plastid	74.37	76.29
KRH55334	Soybean	plastid	76.13	75.94
TraesCS2D01G563700.1	Wheat	cytosol	45.98	75.93
Zm00001d032576_P001	Maize	plastid	75.38	75.76
Bra003004.1-P	Field mustard	plastid	76.38	75.43
Bra019049.1-P	Field mustard	plastid	75.38	75.38
Os10t0496900-02	Rice	plastid	75.13	74.38
HORVU1Hr1G044680.1	Barley	plastid	73.62	74.18
GSMUA_Achr3P14270_001	Banana	plastid	72.11	74.16
GSMUA_Achr11P...	Banana	plastid	73.62	73.99
TraesCS1B01G186300.1	Wheat	plastid	73.37	73.92
KRH26074	Soybean	plastid	62.56	72.81
EES11656	Sorghum	plastid	70.1	72.47
Zm00001d001820_P001	Maize	plastid	69.35	71.32
TraesCS2A01G590600.1	Wheat	plastid	69.1	70.88
Os04t0678700-01	Rice	plastid	68.84	70.8
TraesCS2B01G593000.1	Wheat	plastid	68.84	70.62
TraesCS2D01G563600.1	Wheat	golgi, plastid	68.84	70.62
TraesCS1A01G171000.1	Wheat	golgi, plastid	73.87	70.5
TraesCS1D01G168700.2	Wheat	plastid	73.62	70.26
GSMUA_Achr7P04280_001	Banana	plastid	70.1	70.1
HORVU2Hr1G119050.2	Barley	mitochondrion	50.0	53.07
HORVU4Hr1G073090.1	Barley	plastid	18.59	52.86
HORVU2Hr1G006120.3	Barley	plastid	15.83	51.64
HORVU2Hr1G020490.1	Barley	plastid	20.35	50.0
HORVU5Hr1G104070.1	Barley	plastid	16.08	50.0
Bra035220.1-P	Field mustard	cytosol	25.88	32.49
Bra020819.1-P	Field mustard	cytosol, plastid	25.88	31.99
Bra013690.1-P	Field mustard	plastid	25.63	31.48
Bra017180.1-P	Field mustard	cytosol	25.38	31.46
Bra005188.1-P	Field mustard	cytosol	24.87	31.23
Bra009580.1-P	Field mustard	mitochondrion	25.38	30.51
Bra005729.1-P	Field mustard	mitochondrion	24.12	29.0
Bra013757.1-P	Field mustard	cytosol	23.62	28.31
Bra019248.1-P	Field mustard	cytosol	23.37	28.01
Bra027706.1-P	Field mustard	plastid	23.87	27.46
Bra027725.1-P	Field mustard	plastid	24.12	27.12
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	22.61	24.13
Bra029096.1-P	Field mustard	nucleus	21.11	22.22
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	21.61	21.18
HORVU2Hr1G119090.2	Barley	plastid	21.86	20.57
Bra022628.1-P	Field mustard	cytosol, mitochondrion	20.6	20.45
Bra037939.1-P	Field mustard	cytosol	21.86	17.5
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	EnsemblPlantsGene:Bra030540	EnsemblPlants:Bra030540.1	EnsemblPlants:Bra030540.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016630	GO:GO:0055114	UniProt:M4EP20
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419	PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct
InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniParc:UPI0002545A8F	SEG:seg	:

Description

AT1G03630 (E=2e-188) POR C, PORC | POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase

Coordinates

chrA08:-:21414302..21415833

Molecular Weight (calculated)

43575.8 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.401

Length

398 amino acids

Sequence
(BLAST)

001: MALQAAYSLL PSTTASIHKE GRFSASLKET TLTSFPFSNN LRSDKISIKE QRRQNPRFST GIRAQTVTAT PPSNEASPEQ KKTQRKGTAV ITGASSGLGL
101: ATAKALADTG KWHVIMACRN FLKAEKAAKS VGMSKEDYTV MHLDLASLES VKQFVDNYRR TERPLDVLVC NAAVYQPTAK EPSFTAEGFE LSVGTNHLGH
201: FLLSRLLLDD LKKSDYPSKR MIIVGSITGN TNTLAGNVPP KANLGDLRGL ASGLNGQNSS MIDGGEYDGA KAYKDSKVCN MLTMQELHRR YHEETGVTFA
301: SLYPGCIATT GLFREHVPLF RLLFPPFQKY ITKGYVSEEE AGKRLAQVVS DPSLGKSGVY WSWNNNSSSF ENQLSKEASD AEKAKKLWEV SEKLVGLA

Best Arabidopsis Sequence Match ( AT1G03630.1 )
(BLAST)

001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A

Arabidopsis Description

PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.