Factsheet for Bra005188.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52816	Canola	cytosol	99.68	98.75
CDX74954	Canola	cytosol	99.37	98.44
CDY52817	Canola	cytosol	98.42	97.5
Bra017180.1-P	Field mustard	cytosol	91.17	90.03
AT2G37540.1	Thale cress	cytosol	82.02	81.0
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	69.72	68.85
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	69.4	68.75
Bra009580.1-P	Field mustard	mitochondrion	70.66	67.67
VIT_08s0040g03400.t01	Wine grape	plastid	68.45	66.98
GSMUA_Achr7P15240_001	Banana	plastid	68.14	66.67
KRH32305	Soybean	plastid	67.82	66.56
KRH19708	Soybean	nucleus	67.82	66.56
Bra005729.1-P	Field mustard	mitochondrion	69.09	66.16
GSMUA_Achr11P...	Banana	cytosol	67.51	66.05
Solyc10g086390.1.1	Tomato	mitochondrion	66.88	65.63
PGSC0003DMT400022813	Potato	mitochondrion	65.93	65.31
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	65.93	65.31
PGSC0003DMT400049292	Potato	mitochondrion	66.25	65.02
EES02479	Sorghum	cytosol, plastid	65.62	65.0
Os01t0151700-01	Rice	cytosol	65.62	64.8
KRH67540	Soybean	nucleus	65.93	64.71
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	65.3	64.69
KRG95813	Soybean	nucleus	65.62	64.4
TraesCS3B01G091800.3	Wheat	cytosol	64.04	63.44
TraesCS5B01G279400.1	Wheat	plastid	63.72	62.73
TraesCS5D01G287000.1	Wheat	plastid	63.72	62.73
TraesCS5A01G280400.1	Wheat	plastid	63.09	62.11
TraesCS3A01G077400.2	Wheat	cytosol, plastid	62.46	56.57
Bra020819.1-P	Field mustard	cytosol, plastid	57.41	56.52
HORVU3Hr1G013970.6	Barley	plastid	62.78	56.06
Bra035220.1-P	Field mustard	cytosol	55.2	55.2
Bra013690.1-P	Field mustard	plastid	55.52	54.32
Zm00001d039397_P001	Maize	cytosol	39.75	51.85
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	63.41	51.8
TraesCS3D01G077500.2	Wheat	cytosol, plastid	55.84	50.57
Bra019248.1-P	Field mustard	cytosol	51.42	49.1
Bra013757.1-P	Field mustard	cytosol	50.47	48.19
Bra027706.1-P	Field mustard	plastid	47.95	43.93
Bra027725.1-P	Field mustard	plastid	47.95	42.94
Bra037939.1-P	Field mustard	cytosol	47.32	30.18
Bra019049.1-P	Field mustard	plastid	32.49	25.88
Bra026349.1-P	Field mustard	plastid	31.55	25.77
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	30.28	25.74
Bra033415.1-P	Field mustard	plastid	31.86	25.25
Bra029096.1-P	Field mustard	nucleus	29.97	25.13
Bra030540.1-P	Field mustard	plastid	31.23	24.87
Bra003004.1-P	Field mustard	plastid	31.55	24.81
Bra022628.1-P	Field mustard	cytosol, mitochondrion	29.65	23.44
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	29.65	23.15
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra005188.1	EnsemblPlants:Bra005188.1-P	EnsemblPlantsGene:Bra005188	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002547998	UniProt:M4CLV1	MapMan:35.1	:	:

Description

AT2G37540 (E=9e-134) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA05:+:3900389..3903298

Molecular Weight (calculated)

34475.6 Da

IEP (calculated)

8.026

GRAVY (calculated)

0.018

Length

317 amino acids

Sequence
(BLAST)

001: MEIYGMVTGK AGKSGYGSAS TAEDVTHSID AKHLTAIITG GTSGIGLEAA RVLGMRGAHV IIAARNTKAA NDSKEMILQM YPNARIDCLQ LDLSSIKSVR
101: SFIHQFLALN VPLNILINNA GVMFCPFQLS EDGIESQFAT NHIGHFLLTN LLLDKMKSSA RESGIEGRIV NLSSIAHTYT YTEGIMFDYI NDPDRKKAYG
201: QSKLANLLHS NALSRKLQEE GVNITINSVH PGLITTNLFR HSGLGMAVLK AMSFFLWKNI PQGAATTCYV ALHPDLKGVT GKYFTDCNVT TPSNFATDTT
301: LADKLWDFSI KLVDSLP

Best Arabidopsis Sequence Match ( AT2G37540.1 )
(BLAST)

001: MGIYGVMTGK KGKSGFGSAS TAEDVTQAID ASHLTAIITG GTSGIGLEAA RVLAMRGAHV IIAARNPKAA NESKEMILQM NPNARVDYLQ IDVSSIKSVR
101: SFVDQFLALN VPLNILINNA GVMFCPFKLT EDGIESQFAT NHIGHFLLTN LLLDKMKSTA RESGVQGRIV NLSSIAHTYT YSEGIKFQGI NDPAGYSERR
201: AYGQSKLSNL LHSNALSRRL QEEGVNITIN SVHPGLVTTN LFRYSGFSMK VFRAMTFLFW KNIPQGAATT CYVALHPDLE GVTGKYFGDC NIVAPSKFAT
301: NNSLADKLWD FSVFLIDSIS K

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80924]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.