Factsheet for VIT_08s0040g03400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20890_001	Banana	cytosol, mitochondrion, plastid	73.77	74.69
GSMUA_Achr11P...	Banana	cytosol	74.38	74.38
PGSC0003DMT400022813	Potato	mitochondrion	73.15	74.06
KRH32305	Soybean	plastid	73.77	73.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	72.22	72.9
PGSC0003DMT400049292	Potato	mitochondrion	72.53	72.76
KRH19708	Soybean	nucleus	72.53	72.76
Zm00001d039848_P002	Maize	cytosol, mitochondrion, plastid	71.6	72.5
Solyc10g086390.1.1	Tomato	mitochondrion	72.22	72.45
GSMUA_Achr7P15240_001	Banana	plastid	71.91	71.91
Solyc09g010510.2.1	Tomato	cytosol, mitochondrion, plastid	70.99	71.88
EES02479	Sorghum	cytosol, plastid	70.99	71.88
KRH67540	Soybean	nucleus	71.6	71.83
TraesCS3B01G091800.3	Wheat	cytosol	70.68	71.56
KRG95813	Soybean	nucleus	70.68	70.9
TraesCS5D01G287000.1	Wheat	plastid	70.37	70.81
Os01t0151700-01	Rice	cytosol	69.75	70.41
AT5G02540.1	Thale cress	mitochondrion	71.91	70.39
CDY68648	Canola	cytosol	45.37	70.33
CDY10440	Canola	plastid	70.37	70.15
CDY40365	Canola	mitochondrion	71.6	70.09
TraesCS5B01G279400.1	Wheat	plastid	69.44	69.88
Bra009580.1-P	Field mustard	mitochondrion	71.3	69.79
TraesCS5A01G280400.1	Wheat	plastid	69.14	69.57
CDY18436	Canola	cytosol	68.83	69.47
Bra017180.1-P	Field mustard	cytosol	68.83	69.47
CDY11217	Canola	mitochondrion	70.68	69.18
Bra005729.1-P	Field mustard	mitochondrion	70.68	69.18
CDX81232	Canola	cytosol	68.52	69.16
Bra005188.1-P	Field mustard	cytosol	66.98	68.45
CDY52816	Canola	cytosol	67.59	68.44
CDX74954	Canola	cytosol	67.28	68.12
CDY52817	Canola	cytosol	66.98	67.81
AT2G37540.1	Thale cress	cytosol	66.36	66.98
CDX88292	Canola	cytosol	32.1	66.24
CDY55418	Canola	cytosol	60.8	65.89
HORVU3Hr1G013970.6	Barley	plastid	69.75	63.66
TraesCS3A01G077400.2	Wheat	cytosol, plastid	68.21	63.14
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	26.54	62.77
VIT_16s0050g00760.t01	Wine grape	plastid	57.1	59.11
VIT_02s0025g03380.t01	Wine grape	cytosol	57.1	58.73
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	69.44	57.99
TraesCS3D01G077500.2	Wheat	cytosol, plastid	62.35	57.71
Zm00001d039397_P001	Maize	cytosol	41.05	54.73
VIT_17s0000g08920.t01	Wine grape	cytosol	48.46	47.58
VIT_02s0025g02190.t01	Wine grape	cytosol	47.53	45.83
VIT_16s0050g00750.t01	Wine grape	plastid	57.72	29.92
VIT_12s0059g00270.t01	Wine grape	plastid	34.26	27.82
VIT_17s0000g00520.t01	Wine grape	cytosol, mitochondrion, peroxisome	31.79	27.76
VIT_19s0014g03160.t01	Wine grape	plastid	32.72	26.77

Protein Annotations

EntrezGene:100246509	wikigene:100246509	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI32603	ProteinID:CBI32603.3
UniProt:D7TQ83	EMBL:FN596008	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100246509	wikigene:LOC100246509	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR24320	PANTHER:PTHR24320:SF81	InterPro:SDR_fam	SUPFAM:SSF51735
TIGR:TC55123	TIGR:TC66001	UniParc:UPI00015CA431	ArrayExpress:VIT_08s0040g03400	EnsemblPlantsGene:VIT_08s0040g03400	EnsemblPlants:VIT_08s0040g03400.t01
unigene:Vvi.10334	RefSeq:XP_002273550	RefSeq:XP_002273550.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:14354707..14358038

Molecular Weight (calculated)

35125.3 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.026

Length

324 amino acids

Sequence
(BLAST)

001: MGIFSLITGR PGPSGFGSAS TAEQVTEGVD ASNLTAIVTG GASGIGFETA RVLALRKAHV VIAARNMDAA NEAKQLILKD NEAAHVDVLK LDLCSMKSIR
101: AFVDNFNALN LPLNLLINNA GIMFCPFQLS QDGIESQFAT NHIGHFLLTN LLLDKMKSTA RTTGIEGRIV NLSSIAHLHT YENGIKFDGI NDEKSYSDKR
201: AYGQSKLANI LHAKELSRRL QEEGANISVN AVHPGLIMTN LFRHSAVLMK ILQLLSYILW KNVPQGAATT CYVALHPSMK GVSGKYYLDC NEMAPSAYAS
301: DETLAKKLWD FSNKLVNSPP TTSN

Best Arabidopsis Sequence Match ( AT5G02540.1 )
(BLAST)

001: MGLYSLITGR RGPSGFGSAS TAEEVTQGID ATNLTAIITG GTGGIGMETA RVLSKRGAHV VIGARNMGAA ENAKTEILRQ NANARVTLLQ LDLSSIKSIK
101: AFVREFHALH LPLNLLINNA GVMFCPYQLS EDGIELQFAT NHIGHFLLTN LLLDTMKNTA KTSGVEGRIL NVSSVAHIYT YQEGIQFDSI NDICSYSDKR
201: AYGQSKLANI LHANELSRQL QEEGVNITAN SVHPGLILTN LFQHTALLMR FLKFFSFYLW KNIPQGAATT CYVALHPSVK GVTGKYFADC NEVTPSKLAR
301: DETLAQKLWD FSVKLINSVS KKNYLGFDDT T

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KCF2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.