Factsheet for VIT_17s0000g08920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02840.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	VIT_04s0008g02840.t01	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54355	Soybean	cytosol	79.39	79.39
PGSC0003DMT400046811	Potato	plastid	78.48	78.25
PGSC0003DMT400069439	Potato	plastid	57.27	77.46
KRH57109	Soybean	mitochondrion	78.18	76.56
KRH03249	Soybean	mitochondrion, plastid	77.27	75.67
KRH63592	Soybean	plastid	80.3	74.44
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	78.18	71.67
Solyc06g071610.1.1	Tomato	plastid	75.76	68.31
GSMUA_Achr1P25440_001	Banana	cytosol	63.33	67.86
AT5G50130.1	Thale cress	mitochondrion	69.7	67.85
VIT_02s0025g02190.t01	Wine grape	cytosol	55.45	54.46
CDX71585	Canola	mitochondrion	55.45	53.98
VIT_08s0040g03400.t01	Wine grape	plastid	47.58	48.46
VIT_16s0050g00760.t01	Wine grape	plastid	45.15	47.6
VIT_02s0025g03380.t01	Wine grape	cytosol	43.94	46.03
Bra037939.1-P	Field mustard	cytosol	65.76	43.66
CDY37755	Canola	mitochondrion, plastid	65.76	34.83
VIT_17s0000g00520.t01	Wine grape	cytosol, mitochondrion, peroxisome	28.18	25.07
VIT_16s0050g00750.t01	Wine grape	plastid	45.15	23.84
VIT_12s0059g00270.t01	Wine grape	plastid	27.88	23.06
VIT_19s0014g03160.t01	Wine grape	plastid	27.27	22.73

Protein Annotations

EntrezGene:100263820	wikigene:100263820	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CBI14982	ProteinID:CBI14982.3
UniProt:D7SHM2	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100263820	wikigene:LOC100263820	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106
PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR24320	PANTHER:PTHR24320:SF120	InterPro:SDR_fam	SUPFAM:SSF51735
UniParc:UPI000198523E	ArrayExpress:VIT_17s0000g08920	EnsemblPlantsGene:VIT_17s0000g08920	EnsemblPlants:VIT_17s0000g08920.t01	unigene:Vvi.21335	RefSeq:XP_002281557
RefSeq:XP_002281557.1	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:10401072..10403551

Molecular Weight (calculated)

36266.8 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.175

Length

330 amino acids

Sequence
(BLAST)

001: MKETLRYLAG LAGPSGYGSN STAEQVTEDC SLPSQLTAII TGATSGIGAE TARVMAKRGV RVIIPARDLK KAGEMKERIQ KESPKAEVIV LEIDLSSFAS
101: IKRFCSEFLS LGLPLHILIN NAGKFSHKLE FSEDKIEMSF ATNYLGHFLL TELLIEKMVE TAAQTGIQGR IINVSSVIHS WVKRDGFRFN QMLNPKNYNG
201: TRAYAQSKLA NILHAKELAR QLKARNARVT INAVHPGIVK TGIIRDHKGF ITDSLFFIAS KLLKSTSQGA STTCYVGLSR KTEGVSGKYY ADCNECSCSS
301: MANDESEAHN LWRQSRALIH RRLRLPAAAA

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.