Factsheet for Bra037939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025649.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50130.1	Bra025649.1-P	AT5G39730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G50130.1	Thale cress	mitochondrion	58.35	85.55
CDY37755	Canola	mitochondrion, plastid	94.17	75.12
KRH03249	Soybean	mitochondrion, plastid	46.28	68.25
KRH57109	Soybean	mitochondrion	46.08	67.95
KRH54355	Soybean	cytosol	44.87	67.58
PGSC0003DMT400046811	Potato	plastid	44.06	66.16
VIT_17s0000g08920.t01	Wine grape	cytosol	43.66	65.76
KRH63592	Soybean	plastid	45.27	63.2
PGSC0003DMT400069439	Potato	plastid	30.99	63.11
Solyc03g112540.2.1	Tomato	endoplasmic reticulum	43.86	60.56
Solyc06g071610.1.1	Tomato	plastid	42.25	57.38
GSMUA_Achr1P25440_001	Banana	cytosol	35.41	57.14
Bra019248.1-P	Field mustard	cytosol	34.41	51.51
Bra013757.1-P	Field mustard	cytosol	33.6	50.3
Bra017180.1-P	Field mustard	cytosol	31.39	48.6
Bra027706.1-P	Field mustard	plastid	33.6	48.27
Bra005188.1-P	Field mustard	cytosol	30.18	47.32
Bra027725.1-P	Field mustard	plastid	33.4	46.89
Bra009580.1-P	Field mustard	mitochondrion	30.99	46.53
Bra005729.1-P	Field mustard	mitochondrion	30.18	45.32
Bra035220.1-P	Field mustard	cytosol	27.97	43.85
Bra013690.1-P	Field mustard	plastid	28.17	43.21
Bra020819.1-P	Field mustard	cytosol, plastid	27.57	42.55
Bra029096.1-P	Field mustard	nucleus	18.91	24.87
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	18.51	24.66
Bra019049.1-P	Field mustard	plastid	17.91	22.36
Bra033415.1-P	Field mustard	plastid	17.91	22.25
Bra022628.1-P	Field mustard	cytosol, mitochondrion	17.91	22.19
Bra026349.1-P	Field mustard	plastid	17.3	22.16
Bra003004.1-P	Field mustard	plastid	17.91	22.08
Bra030540.1-P	Field mustard	plastid	17.5	21.86
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	17.71	21.67
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra037939.1	EnsemblPlants:Bra037939.1-P	EnsemblPlantsGene:Bra037939	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF120	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI00025449E0	UniProt:M4FA25	MapMan:35.1	:	:

Description

AT5G50130 (E=1e-147) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA10:-:213940..220953

Molecular Weight (calculated)

55262.4 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.227

Length

497 amino acids

Sequence
(BLAST)

001: MGAMCNMQTN QLFLTLIDPH VHYNPIPVKN PHTSSRRIDD PGLIAACHCG AEYRTKYSAS IETHTATSVD SAHRKSIDMA KVESVDSTHH QRVTNESYEI
101: AGGVDNHFKY YIGHHTRPLR TQLRSTDDPS FENAPLTVIE LGDSTRRRNN LFRTHVLPIS KISKNNKHYN RTTTKRPNGF GSRSTAEQVT QHCFLPYSHL
201: TAIITGGTSG IGAETTRVLA KRGVRVVMAV RDMKKAEIVK ERIVRESPEA DIVLLEIDLS SLSSVARFCS QFLSQDLPLN IIINNAGIFS PNLEFSEEKI
301: ELTFATNFLG HYLLTEMLIK KMIDTAKKSG IEGRVINLTS VIHSWVKPDC FSFPELLHPI KYNGTKAYAQ SKLATILHAK ALSRRLKDRN ANVTINAVHP
401: GIVKTGIIRA HKGLLTDSLF LIASKLLKSV SQGAATTCYV ALSNETKRIS GKYFADSNET NCSDLANDVS LALKLCTNSH TLIHDYLHLS LFNLSLL

Best Arabidopsis Sequence Match ( AT5G50130.1 )
(BLAST)

001: MKGTLRYLAG IAGPNGFGSR STAEQVTQHS FFPCSHLTAI ITGGTSGIGA ETARVLAKRG VRVVMAVRDM KKAEMVKERI IRENPEADII LFEIDLSSLS
101: SVARFCSQFL SQDLPLNILI NNAGVFSPNL EFSEEKIELT FATNFLGHYL LTEMLIEKMI DTAEKSGIEG RIINLSSVIH NWVKPDCFSF PKLLHPISRY
201: NGTRAYAQSK LATILHAKAL SKQLKDRNAN VTINAVHPGI VKTGIIRAHK GLFTDSLFLI ASKLLKSISQ GAATTCYVAL SNETKGLSGK YFADCNETNC
301: SDLANDEYVA LKLCTQSRAL IHDHLHEFQI HALPNLCFL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.