Factsheet for Bra013690.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G23430.2	Thale cress	plastid	90.43	90.99
CDY44096	Canola	mitochondrion, plastid	99.69	89.47
Bra020819.1-P	Field mustard	cytosol, plastid	84.88	85.4
AT4G23420.3	Thale cress	plastid	86.42	84.08
VIT_02s0025g03380.t01	Wine grape	cytosol	71.6	73.65
PGSC0003DMT400032133	Potato	cytosol	68.52	70.48
Bra035220.1-P	Field mustard	cytosol	68.83	70.35
KRH41194	Soybean	cytosol, plastid	68.21	70.16
KRH59919	Soybean	cytosol, plastid	68.21	70.16
Solyc08g081200.2.1	Tomato	cytosol	67.28	69.21
GSMUA_AchrUn_...	Banana	cytosol	66.67	69.01
Solyc08g008060.1.1	Tomato	cytosol	64.51	66.35
GSMUA_Achr2P18620_001	Banana	plastid	63.89	65.51
EER96376	Sorghum	mitochondrion, plastid	62.96	64.56
PGSC0003DMT400014810	Potato	mitochondrion	48.46	64.08
Os09t0570300-01	Rice	plasma membrane	62.04	63.61
TraesCS4D01G003200.1	Wheat	golgi	60.49	62.03
TraesCS4B01G002900.1	Wheat	golgi	60.49	62.03
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	60.49	62.03
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	59.88	61.59
TraesCS4B01G003400.1	Wheat	plastid	59.88	61.59
OQU92195	Sorghum	cytosol	57.41	59.05
TraesCS4D01G003400.2	Wheat	mitochondrion	58.33	58.7
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	20.68	58.26
EER91987	Sorghum	plastid	56.17	58.15
Zm00001d019754_P001	Maize	mitochondrion, plastid	62.96	57.79
Zm00001d047150_P003	Maize	plastid	56.17	57.78
Os10t0547900-01	Rice	cytosol	55.86	57.64
OQU92191	Sorghum	plastid	55.25	57.19
TraesCS1B01G221200.1	Wheat	cytosol	55.56	57.14
TraesCS1A01G207500.1	Wheat	cytosol	55.56	57.14
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	56.17	57.05
TraesCS1D01G210800.1	Wheat	plastid	55.56	56.6
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	20.06	56.52
Os04t0291100-01	Rice	mitochondrion	54.32	56.05
Zm00001d029840_P003	Maize	plastid	57.72	55.99
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	19.75	55.65
Bra005188.1-P	Field mustard	cytosol	54.32	55.52
Bra017180.1-P	Field mustard	cytosol	54.32	54.83
Bra009580.1-P	Field mustard	mitochondrion	55.86	54.68
Zm00001d025129_P001	Maize	mitochondrion	39.51	54.47
Bra005729.1-P	Field mustard	mitochondrion	54.94	53.78
Bra019248.1-P	Field mustard	cytosol	45.06	43.98
Bra013757.1-P	Field mustard	cytosol	43.52	42.47
Bra027706.1-P	Field mustard	plastid	43.83	41.04
Bra027725.1-P	Field mustard	plastid	43.21	39.55
Bra026308.1-P	Field mustard	cytosol, nucleus, peroxisome	32.72	28.42
Bra037939.1-P	Field mustard	cytosol	43.21	28.17
Bra019049.1-P	Field mustard	plastid	33.33	27.14
Bra026349.1-P	Field mustard	plastid	32.1	26.8
Bra029096.1-P	Field mustard	nucleus	31.17	26.72
Bra030540.1-P	Field mustard	plastid	31.48	25.63
Bra003004.1-P	Field mustard	plastid	31.48	25.31
Bra022628.1-P	Field mustard	cytosol, mitochondrion	31.17	25.19
Bra019028.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	31.48	25.12
Bra033415.1-P	Field mustard	plastid	30.86	25.0
Bra027724.1-P	Field mustard	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra013690.1	EnsemblPlants:Bra013690.1-P	EnsemblPlantsGene:Bra013690	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002545CE1	UniProt:M4DB30	MapMan:23.1.3.5.1	:	:	:

Description

AT4G23430 (E=6e-160) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA01:+:7151314..7153512

Molecular Weight (calculated)

34846.6 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.167

Length

324 amino acids

Sequence
(BLAST)

001: MWFFGKKGAS GFSARSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLA LRGVHVVMAV RNTGSGAKVK EDIVNRVPGA KLDVMELDLS SMDSVKKFAS
101: DYKSSGRPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKNTSRESK REGRIVNLSS EAHRYSYPEG VRFDKINDKS SYSSIRAYGQ
201: SKLCNILHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNSYLAGAVG AVAKYVLKTV PQGAATTCYV ALSPQVTGVT GEYFLDSNIA KPISLAKDSE
301: LAKKVWDFST KLTESQSGES STSN

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.