Factsheet for TraesCS4D01G002700.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G003200.1	Wheat	golgi	95.56	95.25
TraesCS4B01G003400.1	Wheat	plastid	95.24	95.24
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	93.65	93.35
TraesCS4D01G003400.2	Wheat	mitochondrion	85.08	83.23
Os09t0570300-01	Rice	plasma membrane	81.9	81.65
EER96376	Sorghum	mitochondrion, plastid	80.95	80.7
GSMUA_AchrUn_...	Banana	cytosol	71.75	72.2
Zm00001d019754_P001	Maize	mitochondrion, plastid	77.14	68.84
KRG91556	Soybean	cytosol	67.3	67.73
VIT_02s0025g03380.t01	Wine grape	cytosol	67.62	67.62
PGSC0003DMT400040845	Potato	cytosol	66.98	67.41
KRH59919	Soybean	cytosol, plastid	66.67	66.67
PGSC0003DMT400040848	Potato	plastid	65.71	66.13
Solyc03g025410.2.1	Tomato	nucleus	65.71	66.13
VIT_16s0050g00760.t01	Wine grape	plastid	65.4	65.81
KRH08894	Soybean	plastid	45.08	65.44
KRH41194	Soybean	cytosol, plastid	65.4	65.4
Solyc03g025370.2.1	Tomato	cytosol, nucleus, plastid	64.44	64.86
PGSC0003DMT400032133	Potato	cytosol	64.76	64.76
Solyc08g081200.2.1	Tomato	cytosol	64.76	64.76
CDX86777	Canola	cytosol	64.76	64.35
Bra035220.1-P	Field mustard	cytosol	64.76	64.35
AT4G11410.1	Thale cress	cytosol, mitochondrion	64.76	64.35
CDY13264	Canola	cytosol	64.44	64.04
PGSC0003DMT400040847	Potato	cytosol	63.49	63.9
KRH08897	Soybean	cytosol, mitochondrion	62.86	63.06
Solyc03g025390.2.1	Tomato	cytosol	62.54	62.94
CDY10884	Canola	plastid	62.54	61.18
Solyc03g025400.2.1	Tomato	cytosol	60.95	60.76
Bra020819.1-P	Field mustard	cytosol, plastid	61.9	60.56
CDX76338	Canola	cytosol, plastid	61.9	60.56
KRH38419	Soybean	plastid	61.27	60.5
PGSC0003DMT400085601	Potato	plastid	30.79	60.25
KRH38432	Soybean	cytosol	60.95	60.19
PGSC0003DMT400014810	Potato	mitochondrion	46.67	60.0
KRH35271	Soybean	plastid	66.35	59.89
Bra013690.1-P	Field mustard	plastid	61.59	59.88
AT4G23430.2	Thale cress	plastid	60.95	59.63
KRH08898	Soybean	cytosol	59.68	59.49
KRH38433	Soybean	cytosol	59.68	58.93
KRH38426	Soybean	cytosol	60.63	58.59
KRH35274	Soybean	cytosol, mitochondrion, plastid	66.67	58.5
Solyc08g008060.1.1	Tomato	cytosol	58.41	58.41
CDY69917	Canola	endoplasmic reticulum	56.51	58.36
AT4G23420.3	Thale cress	plastid	61.27	57.96
KRH38431	Soybean	plastid	59.05	57.59
TraesCS1D01G210800.1	Wheat	plastid	57.14	56.6
KRG91557	Soybean	cytosol	37.14	56.25
TraesCS4D01G093500.1	Wheat	mitochondrion	55.56	54.18
CDY44096	Canola	mitochondrion, plastid	61.9	54.02
TraesCS5D01G287000.1	Wheat	plastid	54.92	53.73
KRH08895	Soybean	cytosol	61.27	50.52
TraesCS3D01G077500.2	Wheat	cytosol, plastid	50.48	45.43
TraesCS4D01G351800.1	Wheat	mitochondrion	46.98	44.31
TraesCS4D01G351700.1	Wheat	mitochondrion, plastid	46.98	42.05
TraesCS7D01G055800.1	Wheat	mitochondrion, plastid	46.67	40.61
VIT_16s0050g00750.t01	Wine grape	plastid	67.62	34.08
TraesCS2D01G563700.1	Wheat	cytosol	24.76	32.37
TraesCS2D01G563600.1	Wheat	golgi, plastid	35.87	29.12
TraesCS1D01G168700.2	Wheat	plastid	34.29	25.9
TraesCS6D01G051500.1	Wheat	cytosol	31.75	24.45

Protein Annotations

EnsemblPlants:TraesCS4D01G002700.2	EnsemblPlantsGene:TraesCS4D01G002700	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR24320
PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
TIGR:cd05327	MapMan:23.1.3.5.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:1326281..1329908

Molecular Weight (calculated)

33717.3 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.004

Length

315 amino acids

Sequence
(BLAST)

001: MLPWIFSRKG ASGFSWASTA DQVTAGISAA GLTAIVTGAS SGIGAETARV LAARGAHVVM AVRNLAAAEA VRQAVLAETP GGSVEVMELD LSSLASVRNF
101: AADFAATGLP LNILVNNAGV MATPFSLSKD GIEMQFATNH VGHFLLTNLL LETMKKTSRE SNVEGRIVNV SSEGHRFAYK EGIRFAKLND EEEYSTIAAY
201: GQSKLANILH ANELARRFKE EGVNITANSL HPGAIITNLL RHHSIIDVLH RTLGRLVLKN AKQGAATQCY VALHPDAKGV SGKYWSDSNL YEPSEKAKDA
301: ELGKKLWDYT LDLVA

Best Arabidopsis Sequence Match ( AT4G11410.1 )
(BLAST)

001: MWPFWWKGAS GFSARSTAEE VTHGIDGTGL TAIVTGASSG IGEETTRVLA LRGVHVVMAV RNTDSGNQVR DKILKEIPQA KIDVMKLDLS SMASVRSFAS
101: EYQSLDLPLN LLINNAGIMA CPFLLSSDNI ELQFATNHLG HFLLTNLLLE RMKKTASESN REGRIVIVSS EGHRFAYREG VQFDKINDEA RYNTLQAYGQ
201: SKLGNILHAT ELARLFKEQG VNITANSLHP GSIMTNLLRY HSFINTIGNA VGKYVLKSIP QGAATTCYAA LHPQAKGVSG EYLMDNNISD PNSQGKDKDL
301: AKKLWEFSLR LTGEEES

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LDY7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.