CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013690.1-P	Field mustard	plastid	89.47	99.69
CDY10884	Canola	plastid	87.81	98.45
AT4G23430.2	Thale cress	plastid	81.44	91.3
CDX76338	Canola	cytosol, plastid	76.45	85.71
AT4G23420.3	Thale cress	plastid	78.95	85.59
CDY69917	Canola	endoplasmic reticulum	68.98	81.64
VIT_02s0025g03380.t01	Wine grape	cytosol	64.54	73.97
CDY13264	Canola	cytosol	62.33	70.98
PGSC0003DMT400032133	Potato	cytosol	61.77	70.79
CDX86777	Canola	cytosol	62.05	70.66
KRH41194	Soybean	cytosol, plastid	61.5	70.48
KRH59919	Soybean	cytosol, plastid	61.5	70.48
Solyc08g081200.2.1	Tomato	cytosol	60.66	69.52
GSMUA_AchrUn_...	Banana	cytosol	60.11	69.33
Solyc08g008060.1.1	Tomato	cytosol	58.17	66.67
GSMUA_Achr2P18620_001	Banana	plastid	57.06	65.19
EER96376	Sorghum	mitochondrion, plastid	56.79	64.87
PGSC0003DMT400014810	Potato	mitochondrion	43.77	64.49
Os09t0570300-01	Rice	plasma membrane	55.96	63.92
TraesCS4A01G311400.1	Wheat	mitochondrion, plastid	54.57	62.34
TraesCS4B01G002900.1	Wheat	golgi	54.57	62.34
TraesCS4D01G003200.1	Wheat	golgi	54.57	62.34
TraesCS4B01G003400.1	Wheat	plastid	54.02	61.9
TraesCS4D01G002700.2	Wheat	mitochondrion, plastid	54.02	61.9
OQU92195	Sorghum	cytosol	51.8	59.37
TraesCS5B01G461100.1	Wheat	mitochondrion, plastid	18.84	59.13
TraesCS4D01G003400.2	Wheat	mitochondrion	52.63	59.01
EER91987	Sorghum	plastid	50.69	58.47
Zm00001d047150_P003	Maize	plastid	50.69	58.1
Zm00001d019754_P001	Maize	mitochondrion, plastid	56.79	58.07
Os10t0547900-01	Rice	cytosol	50.42	57.96
CDY68648	Canola	cytosol	33.52	57.89
OQU92191	Sorghum	plastid	49.86	57.51
TraesCS1A01G207500.1	Wheat	cytosol	50.14	57.46
TraesCS1B01G221200.1	Wheat	cytosol	50.14	57.46
TraesCS4A01G492800.1	Wheat	mitochondrion, plastid	18.28	57.39
Os10t0548000-02	Rice	cytosol, peroxisome, plastid	50.69	57.37
TraesCS1D01G210800.1	Wheat	plastid	49.86	56.6
TraesCS3B01G220800.1	Wheat	mitochondrion, plastid	18.01	56.52
Os04t0291100-01	Rice	mitochondrion	49.03	56.37
Zm00001d029840_P003	Maize	plastid	52.08	56.29
CDY52816	Canola	cytosol	49.58	55.94
CDX74954	Canola	cytosol	49.58	55.94
CDY52817	Canola	cytosol	49.58	55.94
CDY18436	Canola	cytosol	49.03	55.14
CDY10440	Canola	plastid	49.31	54.77
CDX81232	Canola	cytosol	48.48	54.52
Zm00001d025129_P001	Maize	mitochondrion	35.46	54.47
CDY11217	Canola	mitochondrion	49.86	54.38
CDY40365	Canola	mitochondrion	49.58	54.08
CDY55418	Canola	cytosol	43.77	52.84
CDX88292	Canola	cytosol	22.44	51.59
CDY72311	Canola	cytosol	25.76	46.04
CDY53896	Canola	plastid	25.21	45.5
CDY72089	Canola	cytosol	25.21	45.27
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	16.62	43.8
CDY10985	Canola	cytosol	39.89	43.37
CDX76323	Canola	cytosol	39.34	42.77
CDY50440	Canola	mitochondrion	39.61	42.18
CDY53433	Canola	plastid	39.06	40.52
CDX71585	Canola	mitochondrion	30.75	32.74
CDY70072	Canola	cytosol	14.4	31.14
CDX92838	Canola	cytosol	26.87	30.31
CDY19025	Canola	cytosol	29.92	28.95
CDX89228	Canola	cytosol, nucleus, peroxisome	29.64	28.69
CDY29311	Canola	plastid	29.92	27.2
CDX89249	Canola	plastid	29.92	27.2
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	26.87	26.5
CDY14325	Canola	plastid	28.53	25.5
CDY51384	Canola	plastid	27.98	25.38
CDY15470	Canola	plastid	27.98	25.38
CDX89877	Canola	plastid	27.42	24.75
CDY18175	Canola	plastid	27.42	24.75
CDY18309	Canola	plastid	23.55	24.36
CDX98171	Canola	plastid	23.27	24.07
CDX96191	Canola	mitochondrion	28.53	23.41
CDY64354	Canola	cytosol	14.68	23.35
CDY27027	Canola	golgi, mitochondrion, nucleus	28.25	22.77
CDY37755	Canola	mitochondrion, plastid	38.78	22.47
CDY29840	Canola	plastid	30.19	17.22
CDX92832	Canola	plastid	29.92	16.95
CDY08387	Canola	cytosol, nucleus, plastid	39.06	15.82
CDY47833	Canola	cytosol, nucleus, plastid	38.78	15.71
CDY38726	Canola	cytosol, golgi, plastid	27.98	12.14

Protein Annotations

EnsemblPlants:CDY44096	EnsemblPlantsGene:GSBRNA2T00079527001	Gene3D:3.40.50.720	GO:A0A078I2S3	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR24320	PANTHER:PTHR24320:SF146	PFAM:PF00106	PRINTS:PR00081	ProteinID:CDY44096	ProteinID:CDY44096.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EDD6FF	UniProt:A0A078I2S3	MapMan:23.1.3.5.1	:

Description

BnaA01g13040DBnaA01g13040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2S3]

Coordinates

chrLK032579:+:16957..20560

Molecular Weight (calculated)

39299.2 Da

IEP (calculated)

9.958

GRAVY (calculated)

-0.178

Length

361 amino acids

Sequence
(BLAST)

001: MCLSNYRFNG ILSSSHRFLF FLLLKKSDHI SHMNKKKMWF FGKKGASGFS ARSTAEEVTH GVDGTGLTAI VTGASSGIGV ETARVLALRG VHVVMAVRNT
101: GSGAKVKEDI VNRVPGAKLD VMELDLSSMD SVRKFASDYK SSGRPLNLLI NNAGIMACPF MLSKDNIELQ FATNHLGHFL LTKLLLDTMK NTSRESKREG
201: RIVNLSSEAH RYSYPEGVRF DKINDKSSYS SIRAYGQSKL CNILHANELT KQLKEDGVNI TANSLHPGAI MTNLGRYFNS YLAGAVGAVA KYVLKTVPQG
301: AATTCYVALS PQVTGVTGEY FLDSNIAKPI SLAKDSELAK KVWDFSTKLT ESQSGESSTS N

Best Arabidopsis Sequence Match ( AT4G23430.2 )
(BLAST)

001: MWFFGSKGAS GFSSRSTAEE VTHGVDGTGL TAIVTGASSG IGVETARVLS LRGVHVVMAV RNTDSGAKVK EDIVKQVPGA KLDVMELDLS SMQSVRKFAS
101: EYKSTGLPLN LLINNAGIMA CPFMLSKDNI ELQFATNHLG HFLLTKLLLD TMKSTSRESK REGRIVNLSS EAHRFSYPEG VRFDKINDKS SYSSMRAYGQ
201: SKLCNVLHAN ELTKQLKEDG VNITANSLHP GAIMTNLGRY FNPYLAVAVG AVAKYILKSV PQGAATTCYV ALNPQVAGVS GEYFQDSNIA KPLPLVKDTE
301: LAKKVWDFST KLTDSQSGES SS

Arabidopsis Description

TIC32Short-chain dehydrogenase TIC 32, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A2RVM0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.