CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026349.1-P	Field mustard	plastid	97.48	99.74
CDY29311	Canola	plastid	99.5	99.5
CDY14325	Canola	plastid	87.66	86.14
KRH27209	Soybean	nucleus, plastid	85.39	84.96
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	83.88	83.88
PGSC0003DMT400039734	Potato	plastid	83.63	83.63
VIT_19s0014g03160.t01	Wine grape	plastid	83.38	83.59
Solyc10g006900.2.1	Tomato	plastid	82.62	83.04
PGSC0003DMT400064369	Potato	plastid	83.12	82.91
CDX98171	Canola	plastid	72.54	82.52
CDY18309	Canola	plastid	72.29	82.23
KRH55334	Soybean	plastid	81.61	81.2
VIT_12s0059g00270.t01	Wine grape	plastid	81.36	80.95
TraesCS2D01G563700.1	Wheat	cytosol	48.87	80.5
EER94008	Sorghum	plastid	79.09	79.7
Zm00001d013937_P001	Maize	plastid	79.35	79.55
PGSC0003DMT400047264	Potato	plastid	79.6	79.4
Zm00001d032576_P001	Maize	plastid	78.84	79.04
Solyc07g054210.2.1	Tomato	plastid	79.09	78.7
KRH26074	Soybean	plastid	67.51	78.36
GSMUA_Achr3P14270_001	Banana	plastid	75.82	77.78
TraesCS1B01G186300.1	Wheat	plastid	77.08	77.47
HORVU1Hr1G044680.1	Barley	plastid	76.83	77.22
GSMUA_Achr11P...	Banana	plastid	76.83	77.02
CDY18175	Canola	plastid	77.33	76.75
CDY15470	Canola	plastid	76.83	76.63
CDY51384	Canola	plastid	76.83	76.63
CDX89877	Canola	plastid	77.08	76.5
Os10t0496900-02	Rice	plastid	76.57	75.62
Os04t0678700-01	Rice	plastid	73.55	75.45
TraesCS2A01G590600.1	Wheat	plastid	73.3	75.0
TraesCS2B01G593000.1	Wheat	plastid	73.05	74.74
TraesCS2D01G563600.1	Wheat	golgi, plastid	73.05	74.74
GSMUA_Achr7P04280_001	Banana	plastid	74.31	74.12
EES11656	Sorghum	plastid	71.79	74.03
TraesCS1A01G171000.1	Wheat	golgi, plastid	77.08	73.38
TraesCS1D01G168700.2	Wheat	plastid	76.83	73.14
Zm00001d001820_P001	Maize	plastid	70.78	72.61
CDX92832	Canola	plastid	96.22	59.97
CDY29840	Canola	plastid	95.47	59.87
HORVU4Hr1G073090.1	Barley	plastid	20.91	59.29
HORVU2Hr1G006120.3	Barley	plastid	18.14	59.02
HORVU5Hr1G104070.1	Barley	plastid	18.39	57.03
HORVU2Hr1G119050.2	Barley	mitochondrion	52.9	56.0
HORVU2Hr1G020490.1	Barley	plastid	22.17	54.32
CDY10884	Canola	plastid	27.46	33.85
CDX86777	Canola	cytosol	26.7	33.44
CDY13264	Canola	cytosol	26.7	33.44
CDX88292	Canola	cytosol	13.1	33.12
CDX74954	Canola	cytosol	26.45	32.81
CDX76338	Canola	cytosol, plastid	26.45	32.61
CDY52816	Canola	cytosol	26.2	32.5
CDY52817	Canola	cytosol	26.2	32.5
CDY69917	Canola	endoplasmic reticulum	24.94	32.46
CDX81232	Canola	cytosol	26.2	32.4
CDY18436	Canola	cytosol	25.94	32.09
CDY10440	Canola	plastid	25.69	31.38
CDY40365	Canola	mitochondrion	25.44	30.51
CDY53896	Canola	plastid	15.11	30.0
CDY44096	Canola	mitochondrion, plastid	27.2	29.92
CDY11217	Canola	mitochondrion	24.69	29.61
CDY72089	Canola	cytosol	14.86	29.35
CDY72311	Canola	cytosol	14.86	29.21
CDY55418	Canola	cytosol	21.66	28.76
CDY68648	Canola	cytosol	15.11	28.71
CDY10441	Canola	cytosol, extracellular, mitochondrion, plastid	9.82	28.47
CDX76323	Canola	cytosol	23.68	28.31
CDY10985	Canola	cytosol	23.68	28.31
CDY50440	Canola	mitochondrion	23.43	27.43
CDY53433	Canola	plastid	23.93	27.3
CDX92838	Canola	cytosol	21.66	26.88
CDX89228	Canola	cytosol, nucleus, peroxisome	22.92	24.4
CDY19025	Canola	cytosol	22.67	24.13
CDY70072	Canola	cytosol	10.08	23.95
CDY64354	Canola	cytosol	13.1	22.91
HORVU2Hr1G119090.2	Barley	plastid	24.18	22.7
CDY29859	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	20.65	22.4
CDX71585	Canola	mitochondrion	18.14	21.24
CDY27027	Canola	golgi, mitochondrion, nucleus	22.17	19.64
CDX96191	Canola	mitochondrion	21.41	19.32
CDY37755	Canola	mitochondrion, plastid	22.42	14.29
CDY38726	Canola	cytosol, golgi, plastid	22.67	10.82
CDY47833	Canola	cytosol, nucleus, plastid	24.18	10.77
CDY08387	Canola	cytosol, nucleus, plastid	23.93	10.66

Protein Annotations

KEGG:00860+1.3.1.33	Gene3D:3.40.50.720	MapMan:7.12.6.5.1	GO:A0A078DKU7	EnsemblPlants:CDX89249	ProteinID:CDX89249
ProteinID:CDX89249.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016630
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00149450001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PRINTS:PR00081	PANTHER:PTHR44419
PANTHER:PTHR44419:SF3	InterPro:Prochl_reduct	InterPro:SDR_fam	SUPFAM:SSF51735	TIGRFAMs:TIGR01289	UniPathway:UPA00668
UniParc:UPI0004EE87D7	SEG:seg	:	:	:	:

Description

BnaA01g16440D

Coordinates

chrLK031858:-:453933..455909

Molecular Weight (calculated)

42905.1 Da

IEP (calculated)

9.730

GRAVY (calculated)

-0.184

Length

397 amino acids

Sequence
(BLAST)

001: MALQAASLVS SAFSVRKDGK LNASSASFKD SSLFGASITE HGSSSLRFKR ELSVRNVAIR AQTAATSSPS ITKSSVDGKK TLRKGNVVVT GASSGLGLAT
101: AKALAETGKW HVIMACRDFL KAERAAKSAG MPKDSYTVMH LDLASLDSVR QFVDNFRRSE MPLDVLVCNA AVYFPTAKEP TYSAEGFELS VATNHLGHFL
201: LSRLLLDDLK KSDYPSKRLI IVGSITGNTN TLAGNVPPKA NLGDLRGLAG GLNGLNSSAM IDGGDFDGAK AYKDSKVCNM LTMQEFHRRY HEETGITFAS
301: LYPGCIASTG LFREHIPLFR TLFPPFQKYI TKGYVSETES GKRLAQVVSD PSLTKSGVYW SWNKASASFE NQLSEEASDV EKARKVWEIS EKLVGLA

Best Arabidopsis Sequence Match ( AT4G27440.1 )
(BLAST)

001: MALQAASLVS SAFSVRKDAK LNASSSSFKD SSLFGASITD QIKSEHGSSS LRFKREQSLR NLAIRAQTAA TSSPTVTKSV DGKKTLRKGN VVVTGASSGL
101: GLATAKALAE TGKWNVIMAC RDFLKAERAA KSVGMPKDSY TVMHLDLASL DSVRQFVDNF RRTETPLDVL VCNAAVYFPT AKEPTYSAEG FELSVATNHL
201: GHFLLARLLL DDLKKSDYPS KRLIIVGSIT GNTNTLAGNV PPKANLGDLR GLAGGLNGLN SSAMIDGGDF DGAKAYKDSK VCNMLTMQEF HRRFHEETGV
301: TFASLYPGCI ASTGLFREHI PLFRALFPPF QKYITKGYVS ETESGKRLAQ VVSDPSLTKS GVYWSWNNAS ASFENQLSEE ASDVEKARKV WEISEKLVGL
401: A

Arabidopsis Description

PORBProtochlorophyllide reductase B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21218]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.