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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G171000.1
TraesCS1A01G340600.1
TraesCS1B01G186300.1
TraesCS1D01G168700.2
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2A01G368500.1
TraesCS2A01G590600.1
TraesCS2B01G365000.1
TraesCS2B01G385700.2
TraesCS2B01G593000.1
TraesCS2D01G345400.1
TraesCS2D01G365300.2
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G03630.1 TraesCS1A01G171000.1 AT1G03630.1 21798944
AT1G03630.1 TraesCS1B01G186300.1 AT1G03630.1 21798944
AT1G03630.1 TraesCS1D01G168700.2 AT1G03630.1 21798944
AT1G03630.1 TraesCS2A01G590600.1 AT1G03630.1 21798944
AT1G03630.1 TraesCS2B01G593000.1 AT1G03630.1 21798944
AT1G03630.1 TraesCS2D01G563600.1 AT1G03630.1 21798944
AT1G03630.1 TraesCS2D01G563700.1 AT1G03630.1 21798944
AT1G03630.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G03630.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G03630.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT1G03630.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
AT1G03630.1 TraesCS2A01G368500.1 AT3G60600.1 21798944
AT1G03630.1 TraesCS2B01G385700.2 AT3G60600.1 21798944
AT1G03630.1 TraesCS2D01G365300.2 AT3G60600.1 21798944
AT1G03630.1 TraesCS6A01G237600.1 AT3G60600.1 21798944
AT1G03630.1 TraesCS6B01G266100.1 AT3G60600.1 21798944
AT1G03630.1 TraesCS6D01G220300.1 AT3G60600.1 21798944
AT1G03630.1 TraesCS7A01G300700.1 AT3G60600.1 21798944
AT1G03630.1 TraesCS7D01G296400.1 AT3G60600.1 21798944
AT1G03630.1 TraesCS1A01G171000.1 AT4G27440.1 21798944
AT1G03630.1 TraesCS1B01G186300.1 AT4G27440.1 21798944
AT1G03630.1 TraesCS1D01G168700.2 AT4G27440.1 21798944
AT1G03630.1 TraesCS2A01G590600.1 AT4G27440.1 21798944
AT1G03630.1 TraesCS2B01G593000.1 AT4G27440.1 21798944
AT1G03630.1 TraesCS2D01G563600.1 AT4G27440.1 21798944
AT1G03630.1 TraesCS2D01G563700.1 AT4G27440.1 21798944
AT1G03630.1 TraesCS5A01G095100.1 AT5G11980.1 21798944
AT1G03630.1 TraesCS5B01G101300.1 AT5G11980.1 21798944
AT1G03630.1 TraesCS5D01G107800.1 AT5G11980.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G590600.1 Wheat plastid 98.45 98.45
TraesCS2B01G593000.1 Wheat plastid 98.2 98.2
TraesCS2D01G563700.1 Wheat cytosol 58.51 94.19
HORVU2Hr1G006120.3 Barley plastid 29.12 92.62
HORVU5Hr1G104070.1 Barley plastid 30.41 92.19
HORVU4Hr1G073090.1 Barley plastid 33.25 92.14
EES11656 Sorghum plastid 84.54 85.19
Zm00001d001820_P001 Maize plastid 84.79 85.01
Os04t0678700-01 Rice plastid 83.25 83.46
HORVU2Hr1G020490.1 Barley plastid 34.02 81.48
GSMUA_Achr3P14270_001 Banana plastid 76.55 76.74
Solyc12g013710.1.1 Tomato extracellular, nucleus, plastid 75.52 73.8
KRH27209 Soybean nucleus, plastid 75.77 73.68
HORVU2Hr1G119050.2 Barley mitochondrion 71.13 73.6
PGSC0003DMT400039734 Potato plastid 75.26 73.55
Solyc10g006900.2.1 Tomato plastid 74.74 73.42
GSMUA_Achr7P04280_001 Banana plastid 75.0 73.12
CDY29311 Canola plastid 74.74 73.05
CDX89249 Canola plastid 74.74 73.05
KRH55334 Soybean plastid 75.0 72.93
VIT_19s0014g03160.t01 Wine grape plastid 74.23 72.73
Bra026349.1-P Field mustard plastid 72.68 72.68
PGSC0003DMT400064369 Potato plastid 74.23 72.36
Bra019049.1-P Field mustard plastid 74.23 72.36
VIT_12s0059g00270.t01 Wine grape plastid 73.45 71.43
AT5G54190.1 Thale cress plastid 74.23 71.11
Bra003004.1-P Field mustard plastid 73.45 70.72
AT4G27440.1 Thale cress plastid 72.94 70.57
CDY14325 Canola plastid 73.45 70.54
CDX89877 Canola plastid 71.91 69.75
TraesCS1D01G168700.2 Wheat plastid 74.74 69.54
Bra033415.1-P Field mustard plastid 71.65 69.5
KRH26074 Soybean plastid 61.08 69.3
CDY18175 Canola plastid 71.39 69.25
CDY51384 Canola plastid 70.88 69.1
CDY15470 Canola plastid 70.88 69.1
AT1G03630.1 Thale cress plastid 71.39 69.08
Bra030540.1-P Field mustard plastid 70.62 68.84
CDX98171 Canola plastid 61.6 68.48
PGSC0003DMT400047264 Potato plastid 70.1 68.34
CDY18309 Canola plastid 61.34 68.19
Solyc07g054210.2.1 Tomato plastid 69.85 67.92
CDY29840 Canola plastid 73.71 45.18
CDX92832 Canola plastid 73.97 45.05
TraesCS4D01G002700.2 Wheat mitochondrion, plastid 29.12 35.87
TraesCS4D01G003200.1 Wheat golgi 28.61 35.13
TraesCS4D01G003400.2 Wheat mitochondrion 27.06 32.61
TraesCS5D01G287000.1 Wheat plastid 27.06 32.61
TraesCS1D01G210800.1 Wheat plastid 25.26 30.82
TraesCS4D01G093500.1 Wheat mitochondrion 23.71 28.48
TraesCS4D01G351800.1 Wheat mitochondrion 22.42 26.05
TraesCS3D01G077500.2 Wheat cytosol, plastid 22.68 25.14
TraesCS4D01G351700.1 Wheat mitochondrion, plastid 22.42 24.72
TraesCS7D01G055800.1 Wheat mitochondrion, plastid 22.68 24.31
TraesCS6D01G051500.1 Wheat cytosol 23.45 22.25
Protein Annotations
EnsemblPlants:TraesCS2D01G563600.1EnsemblPlantsGene:TraesCS2D01G563600Gene3D:3.40.50.720GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016630GO:GO:0055114InterPro:NAD(P)-bd_dom_sfInterPro:Prochl_reductInterPro:SDR_fam
KEGG:00860+1.3.1.33PANTHER:PTHR44419PANTHER:PTHR44419:SF2PFAM:PF00106PRINTS:PR00081SEG:seg
SUPFAM:SSF51735TIGR:cd09810TIGRFAMs:TIGR01289MapMan:7.12.6.5.1::
Description
No Description!
Coordinates
chr2D:+:634796733..634797991
Molecular Weight (calculated)
41240.6 Da
IEP (calculated)
9.940
GRAVY (calculated)
-0.077
Length
388 amino acids
Sequence
(BLAST)
001: MALQLLPSTL SVPKKGSSMG AVAVKDTAAF LGVSSKAKKA SLAVRTQVAT APSPVTTSPG SAAAKPSGKK TLRQGVVVIT GASSGLGLAS AKALAETGKW
101: HVVMACRDFL KASKAAKAAG MADGSYTIMH LDLASLDSVR QFVDAFRRAE MPLDVLVCNA AIYRPTARTP TFTADGHEMS VGVNHLGHFL LARLLMEDLQ
201: KSDYPSRRMV IVGSITGNSN TLAGNVPPKA SLGDLRGLAG GLSGTSGSAM IDGDESFDGA KAYKDSKVCN MLTMQEFHRR YHEETGITFS SLYPGCIATT
301: GLFREHIPLF RTLFPPFQKF ITKGFVSEAE SGKRLAQVVA EPSLTKSGVY WSWNKDSASF ENQLSQEASD PEKARKVWEL SEKLVGLA
Best Arabidopsis Sequence Match ( AT1G03630.1 )
(BLAST)
001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A
Arabidopsis Description
PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.