Factsheet for HORVU2Hr1G020490.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G044680.1
HORVU1Hr1G076010.1
HORVU2Hr1G006120.3
HORVU2Hr1G020490.1
HORVU2Hr1G084420.1
HORVU2Hr1G091830.4
HORVU2Hr1G119050.2
HORVU2Hr1G119090.2
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU4Hr1G073090.1
HORVU5Hr1G025740.13
HORVU5Hr1G104070.1
HORVU6Hr1G060760.3
HORVU7Hr1G071270.2
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03630.1	HORVU1Hr1G044680.1	AT1G03630.1	21798944
AT1G03630.1	HORVU2Hr1G006120.3	AT1G03630.1	21798944
AT1G03630.1	HORVU2Hr1G020490.1	AT1G03630.1	21798944
AT1G03630.1	HORVU2Hr1G119050.2	AT1G03630.1	21798944
AT1G03630.1	HORVU2Hr1G119090.2	AT1G03630.1	21798944
AT1G03630.1	HORVU4Hr1G073090.1	AT1G03630.1	21798944
AT1G03630.1	HORVU5Hr1G104070.1	AT1G03630.1	21798944
AT1G03630.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT1G03630.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G03630.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G03630.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G03630.1	HORVU2Hr1G091830.4	AT3G60600.1	21798944
AT1G03630.1	HORVU6Hr1G060760.3	AT3G60600.1	21798944
AT1G03630.1	HORVU7Hr1G071270.2	AT3G60600.1	21798944
AT1G03630.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT1G03630.1	HORVU1Hr1G044680.1	AT4G27440.1	21798944
AT1G03630.1	HORVU2Hr1G006120.3	AT4G27440.1	21798944
AT1G03630.1	HORVU2Hr1G020490.1	AT4G27440.1	21798944
AT1G03630.1	HORVU2Hr1G119050.2	AT4G27440.1	21798944
AT1G03630.1	HORVU2Hr1G119090.2	AT4G27440.1	21798944
AT1G03630.1	HORVU4Hr1G073090.1	AT4G27440.1	21798944
AT1G03630.1	HORVU5Hr1G104070.1	AT4G27440.1	21798944
AT1G03630.1	HORVU5Hr1G025740.13	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G006120.3	Barley	plastid	68.52	90.98
HORVU5Hr1G104070.1	Barley	plastid	70.37	89.06
HORVU4Hr1G073090.1	Barley	plastid	75.93	87.86
TraesCS2D01G563600.1	Wheat	golgi, plastid	81.48	34.02
TraesCS2A01G590600.1	Wheat	plastid	80.86	33.76
TraesCS2B01G593000.1	Wheat	plastid	80.86	33.76
HORVU2Hr1G119050.2	Barley	mitochondrion	69.14	29.87
Zm00001d001820_P001	Maize	plastid	67.9	28.42
Os04t0678700-01	Rice	plastid	66.05	27.65
EES11656	Sorghum	plastid	65.43	27.53
GSMUA_Achr3P14270_001	Banana	plastid	54.32	22.74
Bra026349.1-P	Field mustard	plastid	54.32	22.68
PGSC0003DMT400039734	Potato	plastid	55.56	22.67
Bra019049.1-P	Field mustard	plastid	55.56	22.61
GSMUA_Achr7P04280_001	Banana	plastid	55.56	22.61
Solyc12g013710.1.1	Tomato	extracellular, nucleus, plastid	54.94	22.42
KRH27209	Soybean	nucleus, plastid	54.94	22.31
Solyc10g006900.2.1	Tomato	plastid	54.32	22.28
CDX89249	Canola	plastid	54.32	22.17
CDY29311	Canola	plastid	54.32	22.17
PGSC0003DMT400064369	Potato	plastid	54.32	22.11
KRH55334	Soybean	plastid	54.32	22.06
HORVU1Hr1G044680.1	Barley	plastid	51.85	21.27
Bra003004.1-P	Field mustard	plastid	52.47	21.09
CDY14325	Canola	plastid	52.47	21.04
AT5G54190.1	Thale cress	plastid	52.47	20.99
VIT_19s0014g03160.t01	Wine grape	plastid	51.23	20.96
AT4G27440.1	Thale cress	plastid	51.85	20.95
VIT_12s0059g00270.t01	Wine grape	plastid	51.23	20.8
CDY18175	Canola	plastid	51.23	20.75
CDY15470	Canola	plastid	50.62	20.6
Bra033415.1-P	Field mustard	plastid	50.62	20.5
CDX89877	Canola	plastid	50.62	20.5
AT1G03630.1	Thale cress	plastid	50.62	20.45
CDY51384	Canola	plastid	50.0	20.35
Bra030540.1-P	Field mustard	plastid	50.0	20.35
PGSC0003DMT400047264	Potato	plastid	49.38	20.1
Solyc07g054210.2.1	Tomato	plastid	49.38	20.05
KRH26074	Soybean	plastid	38.89	18.42
CDY29840	Canola	plastid	54.94	14.06
CDX92832	Canola	plastid	54.94	13.97
CDY18309	Canola	plastid	25.31	11.75
CDX98171	Canola	plastid	25.31	11.75
HORVU3Hr1G013970.6	Barley	plastid	21.6	9.86
HORVU5Hr1G075530.8	Barley	cytosol, nucleus, plastid	21.6	9.02
HORVU4Hr1G086380.1	Barley	mitochondrion, plastid	17.9	8.38
HORVU4Hr1G018230.1	Barley	plastid	16.05	6.7
HORVU7Hr1G011180.12	Barley	plastid	14.81	6.69
TraesCS2D01G563700.1	Wheat	cytosol	8.64	5.81
HORVU2Hr1G119090.2	Barley	plastid	6.17	2.36

Protein Annotations

EnsemblPlants:HORVU2Hr1G020490.1	EnsemblPlantsGene:HORVU2Hr1G020490	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016630	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:Prochl_reduct	InterPro:SDR_fam
KEGG:00860+1.3.1.33	PANTHER:PTHR44419	PANTHER:PTHR44419:SF2	PFAM:PF00106	SEG:seg	SUPFAM:SSF51735
UniParc:UPI000B46A788	UniProt:A0A287HAL2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:56009273..56010664

Molecular Weight (calculated)

16693.4 Da

IEP (calculated)

10.869

GRAVY (calculated)

0.141

Length

162 amino acids

Sequence
(BLAST)

001: MALQLLPSTL SVPKKGSSMG AVTVKDTAAF LGVSSKAKKA LLAVRTQVAT TPSPVTTSPG STASLPSGKK TWRVGQGVVV ITGASSGLGL AAAKALAETG
101: KWHVFMACRD FLKASKAAKV AGMADTSYTV MHLDLAFLDN DMEWGRAEGG GLAPRHRPVL QL

Best Arabidopsis Sequence Match ( AT1G03630.1 )
(BLAST)

001: MALQAAYSLL PSTISIQKEG KFNASLKETT FTGSSFSNHL RAEKISTLLT IKEQRRQKPR FSTGIRAQTV TATPPANEAS PEQKKTERKG TAVITGASSG
101: LGLATAKALA DTGKWHVIMA CRNFLKAEKA ARSVGMSKED YTVMHLDLAS LESVKQFVEN FRRTEQPLDV LVCNAAVYQP TAKEPSFTAE GFEISVGTNH
201: LGHFLLSRLL LDDLKKSDYP SKRMIIVGSI TGNTNTLAGN VPPKANLGDL RGLASGLNGQ NSSMIDGGEF DGAKAYKDSK VCNMLTMQEL HRRYHEETGV
301: TFASLYPGCI ATTGLFREHI PLFRLLFPPF QKYITKGYVS EEEAGKRLAQ VVSDPSLGKS GVYWSWNNNS SSFENQLSKE ASDAEKAKKL WEVSEKLVGL
401: A

Arabidopsis Description

PORCProtochlorophyllide reductase C, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.