Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G141300.1 | Wheat | nucleus | 93.89 | 91.82 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 93.89 | 91.25 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 93.89 | 91.25 |
| EES02290 | Sorghum | nucleus, plastid | 80.39 | 77.64 |
| Os01t0200500-01 | Rice | nucleus | 81.03 | 77.06 |
| Zm00001d008871_P001 | Maize | mitochondrion | 78.78 | 76.09 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 38.59 | 53.1 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 46.62 | 45.74 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 46.62 | 43.81 |
| KRH23409 | Soybean | mitochondrion | 46.3 | 43.5 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 45.98 | 42.69 |
| Bra027174.1-P | Field mustard | plastid | 45.02 | 41.92 |
| AT3G16310.1 | Thale cress | plastid | 43.73 | 41.34 |
| CDY30157 | Canola | plastid | 45.66 | 33.49 |
| HORVU3Hr1G071060.1 | Barley | plastid | 33.44 | 33.33 |
| HORVU1Hr1G076010.1 | Barley | plastid | 34.08 | 32.02 |
| Solyc03g120880.2.1 | Tomato | nucleus | 45.98 | 28.49 |
| CDX97739 | Canola | plastid | 45.02 | 20.99 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | UniProt:A0A287KI91 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 |
| GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0031965 |
| GO:GO:0051028 | EnsemblPlantsGene:HORVU3Hr1G026980 | EnsemblPlants:HORVU3Hr1G026980.2 | InterPro:IPR007846 | InterPro:IPR012677 | InterPro:Nucleoporin_NUP53 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 | InterPro:RBD_domain_sf |
| InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | UniParc:UPI000B48915D | SEG:seg | : | : |
Description
Nuclear pore complex protein NUP35 [Source:UniProtKB/TrEMBL;Acc:A0A287KI91]
Coordinates
chrchr3H:-:113014140..113018899
Molecular Weight (calculated)
33898.8 Da
IEP (calculated)
9.925
GRAVY (calculated)
-0.683
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATRPDHRR HQSPFLRDLS SPVSSSFRMP PASVRREAQA STPPPPPPLL SLDDLSRHSP SPPPHAPPQE AMSPSPPPAR GGFFSTPQRS NGSPSPAAWW
101: TPSREEKARD SSPVDGVVHQ QQSPPTASGQ QQQQQVALIT LPPPREVARP EMPRDSVLST GRVDEEEWVT VFGFLPADTN FVLREFEKCG LVLRHVTGPR
201: DANWMHILYQ SRHDAQKALA KHGQQLNSVL IIGVKQVDPW QRPYLNENTN DTYNGGMSVP FPSQAVAPSG FATRNTLAPL PNNSLQNGNE SNRGAPGAIA
301: SPAKSVLSKV M
101: TPSREEKARD SSPVDGVVHQ QQSPPTASGQ QQQQQVALIT LPPPREVARP EMPRDSVLST GRVDEEEWVT VFGFLPADTN FVLREFEKCG LVLRHVTGPR
201: DANWMHILYQ SRHDAQKALA KHGQQLNSVL IIGVKQVDPW QRPYLNENTN DTYNGGMSVP FPSQAVAPSG FATRNTLAPL PNNSLQNGNE SNRGAPGAIA
301: SPAKSVLSKV M
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.