Factsheet for HORVU1Hr1G048610.3

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT5G07250.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G187500.1	Wheat	plasma membrane	95.08	95.67
TraesCS1B01G196600.1	Wheat	plasma membrane	95.69	95.4
TraesCS1A01G188900.1	Wheat	plasma membrane	94.77	94.19
Zm00001d029668_P001	Maize	plasma membrane	79.38	77.25
Zm00001d029667_P001	Maize	plasma membrane	79.38	77.25
Os10t0521900-01	Rice	plasma membrane	77.23	75.6
EER94630	Sorghum	cytosol, golgi, plasma membrane	77.54	75.22
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	59.69	61.01
PGSC0003DMT400007890	Potato	plasma membrane	61.85	60.91
Solyc03g026080.2.1	Tomato	plasma membrane	59.38	60.69
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	61.23	60.67
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	61.85	60.36
KRH09112	Soybean	plasma membrane	60.62	59.88
HORVU5Hr1G080690.2	Barley	plasma membrane	59.08	59.81
VIT_16s0100g00640.t01	Wine grape	plasma membrane	59.69	59.69
CDY45976	Canola	plasma membrane	58.15	59.25
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	58.15	59.25
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	57.54	58.99
CDY67235	Canola	plasma membrane	57.85	58.93
KRH38564	Soybean	plasma membrane	59.69	58.79
KRG91456	Soybean	cytosol, golgi, plasma membrane	59.08	58.36
CDY47350	Canola	plasma membrane	56.31	58.1
Bra027622.1-P	Field mustard	plasma membrane	56.0	57.96
KRH35359	Soybean	cytosol, golgi, plasma membrane	58.77	57.88
AT5G07250.1	Thale cress	plasma membrane	61.54	57.8
HORVU7Hr1G056630.1	Barley	plasma membrane	57.85	57.67
CDX98992	Canola	plasma membrane	60.0	57.35
CDY66606	Canola	plasma membrane	53.23	56.91
Bra019783.1-P	Field mustard	plasma membrane	53.23	56.91
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.62	56.77
CDX70021	Canola	plasma membrane	60.62	56.77
CDY49197	Canola	plasma membrane	56.0	56.7
Bra005930.1-P	Field mustard	plasma membrane	56.62	56.62
CDX78286	Canola	plasma membrane	56.62	56.62
HORVU4Hr1G086150.3	Barley	plastid	67.08	56.19
AT1G12750.4	Thale cress	plasma membrane	52.92	56.03
CDX81043	Canola	plasma membrane	55.69	55.52
CDX70020	Canola	mitochondrion, plasma membrane	54.15	54.32
Bra013673.1-P	Field mustard	plasma membrane	45.23	52.13
CDY53134	Canola	plasma membrane	50.15	51.91
CDY41251	Canola	plasma membrane	49.85	51.76
AT4G23070.1	Thale cress	plasma membrane	49.23	51.12
CDY60266	Canola	plasma membrane	55.08	50.0
HORVU0Hr1G006330.1	Barley	plastid	22.77	48.68
HORVU3Hr1G029090.1	Barley	plastid	22.77	48.68
CDX98993	Canola	cytosol	47.08	48.11
HORVU4Hr1G027850.1	Barley	peroxisome	54.77	46.97
Bra009280.1-P	Field mustard	cytosol	52.62	45.84
HORVU2Hr1G095170.6	Barley	mitochondrion	49.85	43.9

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EMBL:AK358072	ncoils:Coil	UniProt:F2D2G5	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:HORVU1Hr1G048610
EnsemblPlants:HORVU1Hr1G048610.3	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF63	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.015	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000200517B
SEG:seg	:	:	:	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F2D2G5]

Coordinates

chrchr1H:+:360657161..360660047

Molecular Weight (calculated)

35283.6 Da

IEP (calculated)

9.848

GRAVY (calculated)

0.453

Length

325 amino acids

Sequence
(BLAST)

001: MAGSRRDADL KEKGPPPPPP PQPGREEERE WVPWIVPVFV AANVALFAVA MYANNCPAHA RGGRSGRRCV GAGLLRRFAF EPLSQNPLLG PSSATLQKLG
101: ALVWEKVVHE QQGWRLVTCI WLHAGVVHLL ANMLSLVLVG LRLEQQFGFV RVGVIYLVSG VGGSVMSSLF IRDNISVGAS GALFGLLGAM LSELFTNWTI
201: YTNKAAALVT LLFVIAVNLA IGILPHVDNF AHIGGFLTGF LLGFVLLMRP HYGWAQRYVL PSSVKDVGRK FLAYQWALLA AASVLVVVGL AVGMAMLFRG
301: VNGNEHCQWC HYLSCVPTAR WSCGK

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.