Factsheet for Bra005930.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07250.1	Bra027174.1-P	AT3G16310.1	21798944
AT5G07250.1	Bra002403.1-P	AT5G22290.1	21798944
AT5G07250.1	Bra006619.1-P	AT5G22290.1	21798944
AT5G07250.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78286	Canola	plasma membrane	95.69	95.69
CDX81043	Canola	plasma membrane	93.23	92.94
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	78.77	73.78
AT5G07250.1	Thale cress	plasma membrane	76.31	71.68
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	60.92	62.26
Solyc03g026080.2.1	Tomato	plasma membrane	60.31	61.64
KRH09112	Soybean	plasma membrane	61.23	60.49
KRG91456	Soybean	cytosol, golgi, plasma membrane	60.92	60.18
TraesCS4A01G179600.1	Wheat	plasma membrane	35.38	59.9
KRH38564	Soybean	plasma membrane	60.62	59.7
Os09t0525900-01	Rice	plasma membrane	59.08	59.44
Bra009280.1-P	Field mustard	cytosol	68.0	59.25
KRH35359	Soybean	cytosol, golgi, plasma membrane	60.0	59.09
TraesCS5D01G320400.1	Wheat	plasma membrane	58.15	59.06
VIT_16s0100g00640.t01	Wine grape	plasma membrane	58.77	58.77
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	58.77	58.77
TraesCS5A01G314000.1	Wheat	plasma membrane	58.15	58.7
HORVU5Hr1G080690.2	Barley	plasma membrane	57.85	58.57
TraesCS5B01G314900.1	Wheat	plasma membrane	58.15	58.51
Zm00001d052734_P002	Maize	plasma membrane	57.85	58.39
Zm00001d029668_P001	Maize	plasma membrane	60.0	58.38
Zm00001d029667_P001	Maize	plasma membrane	60.0	58.38
GSMUA_Achr11P...	Banana	cytosol	60.31	58.33
Zm00001d021231_P002	Maize	plasma membrane	58.15	58.33
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	57.85	57.85
Os08t0546700-01	Rice	plasma membrane	57.23	57.59
Zm00001d006179_P002	Maize	plasma membrane	57.85	57.49
EER94630	Sorghum	cytosol, golgi, plasma membrane	59.08	57.31
TraesCS1D01G187500.1	Wheat	plasma membrane	56.62	56.97
Bra027622.1-P	Field mustard	plasma membrane	54.77	56.69
TraesCS7A01G269900.1	Wheat	plasma membrane	56.31	56.66
TraesCS5A01G526000.1	Wheat	plasma membrane	57.85	56.63
HORVU1Hr1G048610.3	Barley	plasma membrane	56.62	56.62
TraesCS1B01G196600.1	Wheat	plasma membrane	56.62	56.44
TraesCS7B01G168100.1	Wheat	plasma membrane	56.92	56.4
TraesCS7D01G270400.1	Wheat	plasma membrane	56.92	56.4
TraesCS4D01G350300.1	Wheat	plasma membrane	57.54	56.16
HORVU7Hr1G056630.1	Barley	plasma membrane	56.31	56.13
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	55.08	56.11
Os10t0521900-01	Rice	plasma membrane	57.23	56.02
TraesCS4B01G356600.1	Wheat	plasma membrane	56.92	55.39
TraesCS1A01G188900.1	Wheat	plasma membrane	55.69	55.35
EER95642	Sorghum	cytosol, golgi, plasma membrane	55.08	54.91
Zm00001d027355_P001	Maize	plasma membrane	53.54	54.04
EES11282	Sorghum	cytosol	56.31	53.82
Zm00001d002632_P001	Maize	plasma membrane	56.0	53.53
Bra019783.1-P	Field mustard	plasma membrane	49.54	52.96
Os04t0569300-01	Rice	cytosol	55.08	52.34
TraesCS2B01G419100.1	Wheat	plasma membrane	53.85	51.78
TraesCS2D01G398500.1	Wheat	plasma membrane	53.54	51.33
TraesCS2A01G401000.1	Wheat	plasma membrane	53.54	51.03
Bra013673.1-P	Field mustard	plasma membrane	43.08	49.65
Bra030374.1-P	Field mustard	plasma membrane	46.77	48.72
HORVU4Hr1G086150.3	Barley	plastid	57.54	48.2
Bra018974.1-P	Field mustard	plasma membrane	45.23	46.67
Bra028389.1-P	Field mustard	plasma membrane	56.0	45.61
HORVU0Hr1G006330.1	Barley	plastid	18.46	39.47
HORVU3Hr1G029090.1	Barley	plastid	18.46	39.47
HORVU2Hr1G095170.6	Barley	mitochondrion	44.31	39.02
Bra014862.1-P	Field mustard	cytosol	48.62	37.26
Bra015649.1-P	Field mustard	plasma membrane	37.85	31.87

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EnsemblPlantsGene:Bra005930	EnsemblPlants:Bra005930.1	EnsemblPlants:Bra005930.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952
UniProt:M4CNZ2	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000253F666	SEG:seg	:

Description

AT5G07250 (E=2e-095) ATRBL3 | ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)

Coordinates

chrA03:-:1274755..1276124

Molecular Weight (calculated)

36171.5 Da

IEP (calculated)

8.584

GRAVY (calculated)

0.398

Length

325 amino acids

Sequence
(BLAST)

001: MALGDDPENR EIGSEDGGRS RIGPPPIPSP LSSWLVPLFV VTNVTLFSIA MFVNNCPKHS ESHHSPNHHC VATFLGRLSF EPLRNNPLFG PSSRTLVKLG
101: SLEWCRVVEE HEAWRLFTCI WLHAGVIHLV ANMISLLFVG IRLEQQFGFV RIGVIYVVSG VGGSVLSSLF IRNGVSVGAS GALFGLLGSM LSEILTNWTI
201: YSNKVAALLT LLFVVVINLA FGILPHVDNM GHLGGFVVGF LLGFVLLARP QFKWLAREHI PQDRRLTSKY KPYQYILRLI SLALMIAGFV VTLVMLFRGE
301: DGNDHCRWCR YLRCIPTSKW SCEDV

Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)

001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV

Arabidopsis Description

RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.