Factsheet for Zm00001d006179_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d038803_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G63120.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT5G07250.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT5G07250.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT5G07250.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021231_P002	Maize	plasma membrane	94.19	95.06
Os09t0525900-01	Rice	plasma membrane	90.21	91.33
HORVU5Hr1G080690.2	Barley	plasma membrane	85.93	87.54
TraesCS5D01G320400.1	Wheat	plasma membrane	84.71	86.56
TraesCS5B01G314900.1	Wheat	plasma membrane	85.02	86.07
TraesCS5A01G314000.1	Wheat	plasma membrane	84.71	86.02
Zm00001d052734_P002	Maize	plasma membrane	78.9	80.12
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	68.5	69.78
GSMUA_Achr1P07920_001	Banana	plasma membrane	67.58	68.85
GSMUA_Achr9P20880_001	Banana	plasma membrane	66.06	67.08
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	63.0	64.78
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	62.69	64.67
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	64.83	64.63
Solyc03g026080.2.1	Tomato	plasma membrane	62.69	64.47
KRH09112	Soybean	plasma membrane	64.22	63.83
VIT_16s0100g00640.t01	Wine grape	plasma membrane	63.3	63.69
CDY67235	Canola	plasma membrane	61.77	63.32
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	61.77	63.32
CDY45976	Canola	plasma membrane	61.47	63.01
KRG91456	Soybean	cytosol, golgi, plasma membrane	63.3	62.92
CDY47350	Canola	plasma membrane	60.55	62.86
KRH38564	Soybean	plasma membrane	63.3	62.73
KRH35359	Soybean	cytosol, golgi, plasma membrane	63.0	62.42
Bra027622.1-P	Field mustard	plasma membrane	59.94	62.42
CDY49197	Canola	plasma membrane	60.24	61.37
Zm00001d027355_P001	Maize	plasma membrane	60.24	61.18
CDX98992	Canola	plasma membrane	63.3	60.88
Zm00001d029667_P001	Maize	plasma membrane	62.08	60.78
Zm00001d029668_P001	Maize	plasma membrane	62.08	60.78
AT5G07250.1	Thale cress	plasma membrane	63.91	60.4
AT1G12750.4	Thale cress	plasma membrane	56.57	60.26
Bra019783.1-P	Field mustard	plasma membrane	55.35	59.54
CDY66606	Canola	plasma membrane	55.35	59.54
PGSC0003DMT400007890	Potato	plasma membrane	59.94	59.39
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.0	59.37
CDX70021	Canola	plasma membrane	63.0	59.37
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	60.24	59.16
CDX70020	Canola	mitochondrion, plasma membrane	57.49	58.02
Zm00001d002632_P001	Maize	plasma membrane	60.24	57.94
Bra005930.1-P	Field mustard	plasma membrane	57.49	57.85
CDX78286	Canola	plasma membrane	57.19	57.54
CDX81043	Canola	plasma membrane	56.88	57.06
CDY53134	Canola	plasma membrane	52.6	54.78
CDY41251	Canola	plasma membrane	52.29	54.63
Bra013673.1-P	Field mustard	plasma membrane	47.09	54.61
AT4G23070.1	Thale cress	plasma membrane	51.07	53.35
CDX98993	Canola	cytosol	51.07	52.52
CDY60266	Canola	plasma membrane	56.57	51.68
Bra009280.1-P	Field mustard	cytosol	55.05	48.26
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	53.52	43.64
Zm00001d039870_P002	Maize	plasma membrane	54.43	35.46

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	UniProt:B4FU25	EMBL:BT040613	EMBL:BT055977	EMBL:BT067807
EMBL:EU968902	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	InterPro:IPR035952	ProteinID:ONM22996.1	ProteinID:ONM22997.1	PFAM:PF01694	PANTHER:PTHR22936
PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.A02	SUPFAM:SSF144091
TMHMM:TMhelix	UniParc:UPI00017B808F	EnsemblPlantsGene:Zm00001d006179	EnsemblPlants:Zm00001d006179_P002	EnsemblPlants:Zm00001d006179_T002	SEG:seg

Description

RHOMBOID-like protein 3

Coordinates

chr2:-:200782503..200786127

Molecular Weight (calculated)

36083.3 Da

IEP (calculated)

8.547

GRAVY (calculated)

0.376

Length

327 amino acids

Sequence
(BLAST)

001: MASDGDGKGR VATAPGAGGY GYGYGYAGFE GEEDRKWWPW LVPTVIVACI AVFVVEMYEN NCPKNRSQLG GDCVAGFLRR FSFQPLRENP LLGPSSSTLE
101: KMGALDWNKI VHQNQGWRLI SCIWLHAGLI HLVVNMLSLL FIGIRLEQQF GFVRIGAIYL LSGFGGSVLS ALFLRNNYIS VGASGALFGL LGSMLSELLM
201: NWTIYSNKAA AIITLLFIIA LNLAIGILPH ADNFAHIGGF ATGFLLGFVL LARPQFGWME HHELPQTNQP PKYKAYQYIL WVVALVLLLV GFVISLVMLF
301: KGKNGNDGCH WCHYLNCVPT SKWKCNT

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.