Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G176100.1 | Wheat | plasma membrane | 60.35 | 76.34 |
| OQU84103 | Sorghum | golgi, peroxisome, plasma membrane, plastid | 80.05 | 74.48 |
| TraesCS4D01G136600.2 | Wheat | plasma membrane | 67.83 | 71.58 |
| HORVU4Hr1G027850.1 | Barley | peroxisome | 67.33 | 71.24 |
| Os11t0704800-01 | Rice | plasma membrane | 66.08 | 70.86 |
| TraesCS4B01G141600.1 | Wheat | plasma membrane | 67.83 | 70.65 |
| Zm00001d052734_P002 | Maize | plasma membrane | 46.63 | 58.07 |
| Zm00001d021231_P002 | Maize | plasma membrane | 44.64 | 55.25 |
| KRG99546 | Soybean | plasma membrane | 52.37 | 54.69 |
| GSMUA_Achr6P34110_001 | Banana | plasma membrane | 52.37 | 53.85 |
| KRH66050 | Soybean | plasma membrane | 51.62 | 53.77 |
| Zm00001d027355_P001 | Maize | plasma membrane | 43.14 | 53.73 |
| Zm00001d006179_P002 | Maize | plasma membrane | 43.64 | 53.52 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 51.62 | 53.35 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 52.62 | 53.28 |
| Zm00001d029667_P001 | Maize | plasma membrane | 44.14 | 52.99 |
| Zm00001d029668_P001 | Maize | plasma membrane | 44.14 | 52.99 |
| GSMUA_Achr10P... | Banana | plasma membrane | 31.92 | 52.46 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 50.87 | 52.17 |
| KRH23080 | Soybean | plasma membrane | 50.37 | 51.53 |
| KRH10251 | Soybean | plasma membrane | 49.63 | 51.16 |
| CDY47879 | Canola | plasma membrane | 48.38 | 50.92 |
| CDY39528 | Canola | plasma membrane | 48.63 | 50.91 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 49.38 | 50.9 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 48.38 | 49.62 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 48.38 | 49.62 |
| AT3G53780.2 | Thale cress | plasma membrane | 48.63 | 49.49 |
| Zm00001d002632_P001 | Maize | plasma membrane | 41.9 | 49.41 |
| CDX78204 | Canola | plasma membrane | 48.13 | 49.36 |
| KRH49106 | Soybean | plasma membrane | 32.92 | 49.25 |
| CDY65838 | Canola | plasma membrane | 47.88 | 49.1 |
| Bra028389.1-P | Field mustard | plasma membrane | 48.63 | 48.87 |
| CDX73525 | Canola | plasma membrane | 48.13 | 48.01 |
| GSMUA_Achr10P... | Banana | cytosol | 11.47 | 46.0 |
| Bra014862.1-P | Field mustard | cytosol | 47.38 | 44.81 |
| Zm00001d039870_P002 | Maize | plasma membrane | 48.13 | 38.45 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:103652669 | MapMan:19.4.2.6 | UniProt:A0A1D6PN10 | ProteinID:AQK48249.1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 |
| PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF61 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf |
| SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0004DEABAA | EnsemblPlantsGene:Zm00001d048606 | EnsemblPlants:Zm00001d048606_P001 | EnsemblPlants:Zm00001d048606_T001 |
| SEG:seg | : | : | : | : | : |
Description
RHOMBOID-like protein 1
Coordinates
chr4:+:1119072..1120989
Molecular Weight (calculated)
43716.3 Da
IEP (calculated)
8.951
GRAVY (calculated)
0.221
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPPPHPSMK PGGEEEEDVQ VLVVRSHHHS DQSSTRSHHH QQVVIRARPY YRRWSPWLVS GATVACVAIF LVTMYVNDCP THNSNCAAAG FLGRFAFQPL
101: RENPLLGPSS ATLVKMGALD VAKVVHGRQG WRLITCMWLH AGVVHLLINM LCLLVVGIRL EQEFGFVRIG LVYLISGFGG SLMSALFIQS SSVSVGASGA
201: LFGLIGSMLS ELITNWSLYA NKVAALLTLL LVILSNLALG LLPRVDNFAH IGGLVSGFLL GFVVFVRPHL DWLTQQQRSG GGGQGQQQAP PPVAAARKRK
301: HRTYQYVLWL AAAALLVAGL TAATVLLFRG YDANQHCPWC HYLSCVPTRR WRCDGSPTTC TATTQENNTL SVVCEGGSNR TYVVAAASQD RIKDLCNQLC
401: T
101: RENPLLGPSS ATLVKMGALD VAKVVHGRQG WRLITCMWLH AGVVHLLINM LCLLVVGIRL EQEFGFVRIG LVYLISGFGG SLMSALFIQS SSVSVGASGA
201: LFGLIGSMLS ELITNWSLYA NKVAALLTLL LVILSNLALG LLPRVDNFAH IGGLVSGFLL GFVVFVRPHL DWLTQQQRSG GGGQGQQQAP PPVAAARKRK
301: HRTYQYVLWL AAAALLVAGL TAATVLLFRG YDANQHCPWC HYLSCVPTRR WRCDGSPTTC TATTQENNTL SVVCEGGSNR TYVVAAASQD RIKDLCNQLC
401: T
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.