Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G136600.2 | Wheat | plasma membrane | 99.05 | 82.63 |
| HORVU4Hr1G027850.1 | Barley | peroxisome | 97.16 | 81.27 |
| TraesCS4B01G141600.1 | Wheat | plasma membrane | 98.42 | 81.04 |
| Os11t0704800-01 | Rice | plasma membrane | 88.33 | 74.87 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 76.34 | 60.35 |
| OQU84103 | Sorghum | golgi, peroxisome, plasma membrane, plastid | 80.13 | 58.93 |
| GSMUA_Achr10P... | Banana | plasma membrane | 44.16 | 57.38 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 56.78 | 55.9 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 33.12 | 54.69 |
| GSMUA_Achr6P34110_001 | Banana | plasma membrane | 66.88 | 54.36 |
| KRG99546 | Soybean | plasma membrane | 64.35 | 53.12 |
| KRH66050 | Soybean | plasma membrane | 64.04 | 52.73 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 64.35 | 52.58 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 64.67 | 52.43 |
| CDY47879 | Canola | plasma membrane | 62.78 | 52.23 |
| CDY39528 | Canola | plasma membrane | 63.09 | 52.22 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 53.0 | 52.01 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 62.78 | 51.16 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 52.68 | 51.07 |
| Bra028389.1-P | Field mustard | plasma membrane | 62.46 | 49.62 |
| KRH23080 | Soybean | plasma membrane | 61.2 | 49.49 |
| KRH10251 | Soybean | plasma membrane | 60.57 | 49.36 |
| TraesCS3A01G071500.1 | Wheat | plasma membrane | 57.73 | 48.93 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 51.1 | 48.8 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 60.25 | 48.23 |
| CDY65838 | Canola | plasma membrane | 59.31 | 48.08 |
| CDX78204 | Canola | plasma membrane | 59.31 | 48.08 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 58.99 | 47.83 |
| KRH49106 | Soybean | plasma membrane | 40.38 | 47.76 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 58.68 | 47.57 |
| AT3G53780.2 | Thale cress | plasma membrane | 58.99 | 47.46 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 49.84 | 46.33 |
| CDX73525 | Canola | plasma membrane | 58.68 | 46.27 |
| Bra014862.1-P | Field mustard | cytosol | 57.1 | 42.69 |
| GSMUA_Achr10P... | Banana | cytosol | 8.52 | 27.0 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF61 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4A01G176100 | EnsemblPlants:TraesCS4A01G176100.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:447320867..447324570
Molecular Weight (calculated)
34601.9 Da
IEP (calculated)
9.206
GRAVY (calculated)
0.571
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVNDCPNRS AGNCSAGFLG RFAFQPLKEN PLLGPSSTTL LKMGALDVSK VVQGRQGWRL ITCIWLHAGV VHLLINVLCL LFIGIRLEQE FGFVRIGLVY
101: LISGFGGSLM SALFIRASIS VGASGALFGL IGSMLSELIT NWSLYANKVA ALLTLVLVIV VNLALGILPR VDNFAHIGGL ISGFLLGFVV FIRPQFAWIN
201: QRRVAPGPQA APAERKHKTY QYILWIVAAV LLIVGFTVAI VLLFRGYNAN DHCSWCHYLS CVPTKKWKCN SSPTTCTAML QGNTLNLTCE GKGIYRSYIV
301: AEATQDKIDQ LCNQLCS
101: LISGFGGSLM SALFIRASIS VGASGALFGL IGSMLSELIT NWSLYANKVA ALLTLVLVIV VNLALGILPR VDNFAHIGGL ISGFLLGFVV FIRPQFAWIN
201: QRRVAPGPQA APAERKHKTY QYILWIVAAV LLIVGFTVAI VLLFRGYNAN DHCSWCHYLS CVPTKKWKCN SSPTTCTAML QGNTLNLTCE GKGIYRSYIV
301: AEATQDKIDQ LCNQLCS
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.