Factsheet for GSMUA_Achr10P03570_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20070_001	Banana	plasma membrane	43.03	51.22
GSMUA_Achr6P34110_001	Banana	plasma membrane	71.72	44.87
TraesCS4A01G176100.1	Wheat	plasma membrane	57.38	44.16
Os11t0704800-01	Rice	plasma membrane	58.61	38.24
TraesCS4D01G136600.2	Wheat	plasma membrane	57.38	36.84
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	48.36	36.76
HORVU4Hr1G027850.1	Barley	peroxisome	56.56	36.41
GSMUA_Achr11P...	Banana	cytosol	50.0	36.31
TraesCS4B01G141600.1	Wheat	plasma membrane	56.97	36.1
GSMUA_Achr1P07920_001	Banana	plasma membrane	47.13	35.83
GSMUA_Achr9P20880_001	Banana	plasma membrane	46.72	35.4
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	52.46	31.92
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	54.51	30.86
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	55.33	26.89
GSMUA_Achr2P08240_001	Banana	plasma membrane	40.16	26.78
GSMUA_Achr5P20060_001	Banana	cytosol	2.46	10.91
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G03570_001	EnsemblPlants:GSMUA_Achr10P03570_001	EnsemblPlants:GSMUA_Achr10T03570_001	InterPro:IPR035952
UniProt:M0RF34	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002958853	SEG:seg	:

Description

OsRhmbd18 - Putative Rhomboid homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G03570_001]

Coordinates

chr10:+:11830067..11833367

Molecular Weight (calculated)

26742.7 Da

IEP (calculated)

7.099

GRAVY (calculated)

0.443

Length

244 amino acids

Sequence
(BLAST)

001: MGALEVHKLV NEHQGENLDL QELACYISCL DLAGSLLSSL FTASRISVGA SGALFGLLGG MLSELLTNWT IYANKFAALL TLIFIIVINL AVGLLPDVDN
101: FAHIGGFVSG FLLGFMLLIR PQFGWVSREN ALPMYHSTPV KHKHKIYQYI LWITAALLLV VGFTIGLIML FRGVNANDYC PWCRYLSCIP TSKKSCSSSP
201: IYCSSSQEGS NVNLSCEGSS RTHSYFLPDA TEARLRELCS QLCS

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.