Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G176100.1 | Wheat | plasma membrane | 82.63 | 99.05 |
| TraesCS4B01G141600.1 | Wheat | plasma membrane | 98.16 | 96.88 |
| HORVU4Hr1G027850.1 | Barley | peroxisome | 96.05 | 96.31 |
| Os11t0704800-01 | Rice | plasma membrane | 82.89 | 84.22 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 71.58 | 67.83 |
| OQU84103 | Sorghum | golgi, peroxisome, plasma membrane, plastid | 76.84 | 67.75 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 51.32 | 60.94 |
| GSMUA_Achr6P34110_001 | Banana | plasma membrane | 61.58 | 60.0 |
| KRG99546 | Soybean | plasma membrane | 58.16 | 57.55 |
| GSMUA_Achr10P... | Banana | plasma membrane | 36.84 | 57.38 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 58.16 | 56.96 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 58.42 | 56.78 |
| KRH66050 | Soybean | plasma membrane | 57.37 | 56.62 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 48.16 | 55.79 |
| CDY47879 | Canola | plasma membrane | 55.79 | 55.64 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 47.11 | 55.42 |
| KRH10251 | Soybean | plasma membrane | 56.58 | 55.27 |
| KRH23080 | Soybean | plasma membrane | 56.84 | 55.1 |
| CDY39528 | Canola | plasma membrane | 55.53 | 55.09 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 44.21 | 55.08 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 56.05 | 54.76 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 46.58 | 53.15 |
| Bra028389.1-P | Field mustard | plasma membrane | 55.53 | 52.88 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 54.74 | 52.53 |
| CDY65838 | Canola | plasma membrane | 53.68 | 52.17 |
| CDX78204 | Canola | plasma membrane | 53.68 | 52.17 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 53.42 | 51.92 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 53.16 | 51.66 |
| AT3G53780.2 | Thale cress | plasma membrane | 53.16 | 51.27 |
| KRH49106 | Soybean | plasma membrane | 36.05 | 51.12 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 45.53 | 51.03 |
| CDX73525 | Canola | plasma membrane | 53.42 | 50.5 |
| GSMUA_Achr10P... | Banana | cytosol | 12.89 | 49.0 |
| Bra014862.1-P | Field mustard | cytosol | 51.84 | 46.46 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF61 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4D01G136600 | EnsemblPlants:TraesCS4D01G136600.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:122694163..122697855
Molecular Weight (calculated)
41494.5 Da
IEP (calculated)
9.929
GRAVY (calculated)
0.457
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKPAGAGAG PGTGTVEVRV ERPQRPPVHP NSARLRARPY YRRWTPWLVP AASIACVAVF LVTMFVNDCP NRSAGNCTAG FLGRFAFQPL KENPLLGPSS
101: TTLLKMGALD VSKVVQGRQG WRLITCIWLH AGVVHLLINV LCLLFIGIRL EQEFGFVRIG LVYLISGFGG SLMSALFIRA SISVGASGAL FGLIGSMLSE
201: LITNWSLYAN KVAALLTLVL VIVVNLALGI LPRVDNFAHI GGLISGFLLG FVVFIRPQFA WINQRRVAPG PQAAPAERKH KTYQYILWIV AAILLIVGFT
301: LAIVLLFRGY NANDHCSWCH YLSCVPTKKW KCNSSPTTCT AMLQGNTLNL TCEGKGIYRS YIVAEATQDK IDQLCNQLCS
101: TTLLKMGALD VSKVVQGRQG WRLITCIWLH AGVVHLLINV LCLLFIGIRL EQEFGFVRIG LVYLISGFGG SLMSALFIRA SISVGASGAL FGLIGSMLSE
201: LITNWSLYAN KVAALLTLVL VIVVNLALGI LPRVDNFAHI GGLISGFLLG FVVFIRPQFA WINQRRVAPG PQAAPAERKH KTYQYILWIV AAILLIVGFT
301: LAIVLLFRGY NANDHCSWCH YLSCVPTKKW KCNSSPTTCT AMLQGNTLNL TCEGKGIYRS YIVAEATQDK IDQLCNQLCS
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.