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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78204 Canola plasma membrane 99.74 99.74
CDX73525 Canola plasma membrane 97.19 94.53
CDY30844 Canola cytosol, peroxisome, plasma membrane 92.58 92.58
CDX76189 Canola cytosol, peroxisome, plasma membrane 92.07 92.07
AT3G53780.2 Thale cress plasma membrane 88.75 88.07
TraesCS4A01G176100.1 Wheat plasma membrane 48.08 59.31
PGSC0003DMT400022764 Potato plasma membrane 57.29 58.03
Solyc09g010880.2.1 Tomato extracellular 56.78 57.96
CDY47350 Canola plasma membrane 46.29 57.46
CDY67235 Canola plasma membrane 46.55 57.05
KRH66050 Soybean plasma membrane 56.01 56.88
CDY45976 Canola plasma membrane 46.04 56.43
KRG99546 Soybean plasma membrane 55.24 56.25
VIT_08s0007g00470.t01 Wine grape plasma membrane 55.75 56.19
CDY49197 Canola plasma membrane 46.04 56.07
Os01t0147300-01 Rice plasma membrane 28.9 55.39
TraesCS4D01G136600.2 Wheat plasma membrane 52.17 53.68
HORVU4Hr1G027850.1 Barley peroxisome 51.92 53.56
KRG99955 Soybean endoplasmic reticulum, peroxisome, plasma membrane 53.96 53.28
TraesCS4B01G141600.1 Wheat plasma membrane 52.43 53.25
CDX98992 Canola plasma membrane 46.29 53.24
CDY47879 Canola plasma membrane 51.66 53.02
CDY66606 Canola plasma membrane 41.18 52.96
CDY39528 Canola plasma membrane 51.66 52.74
CDX70021 Canola plasma membrane 46.8 52.74
Os11t0704800-01 Rice plasma membrane 50.13 52.41
KRH49106 Soybean plasma membrane 35.81 52.24
CDX70020 Canola mitochondrion, plasma membrane 43.22 52.16
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 40.66 52.13
CDY53134 Canola plasma membrane 41.69 51.91
CDY41251 Canola plasma membrane 41.43 51.76
CDX81043 Canola plasma membrane 42.97 51.53
CDX78286 Canola plasma membrane 42.2 50.77
TraesCS3B01G085300.1 Wheat plasma membrane 47.57 49.73
CDX87921 Canola plasma membrane 26.6 49.52
TraesCS3A01G071500.1 Wheat plasma membrane 47.31 49.47
CDX98993 Canola cytosol 39.64 48.74
CDY60552 Canola plasma membrane 38.62 48.4
Zm00001d048606_P001 Maize cytosol, nucleus, plasma membrane 49.1 47.88
EES00318 Sorghum golgi, peroxisome, plasma membrane 51.15 47.51
CDY40148 Canola plasma membrane 38.11 47.3
CDY65908 Canola plasma membrane 37.85 46.98
OQU84103 Sorghum golgi, peroxisome, plasma membrane, plastid 51.66 46.87
CDY60266 Canola plasma membrane 41.94 45.81
Zm00001d039870_P002 Maize plasma membrane 51.92 40.44
CDX87497 Canola plasma membrane 35.04 35.49
CDX88394 Canola plasma membrane 34.02 34.28
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078JE28UniProt:A0A078JE28EnsemblPlants:CDY65838ProteinID:CDY65838
ProteinID:CDY65838.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00048330001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF46
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EE16F8
SEG:seg:::::
Description
BnaA09g54780DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE28]
Coordinates
chrLK034971:+:19931..21837
Molecular Weight (calculated)
43328.2 Da
IEP (calculated)
9.943
GRAVY (calculated)
0.219
Length
391 amino acids
Sequence
(BLAST)
001: MGEKDSETAP IWGKPQQRES SNIHPVNIEP STQSGQHRSL NRSRGGSYAE RGRGVKEFRS WFPWLIPCFV IANVVVFVIT MYVNNCPKKS GDCFAGFLGR
101: FSFQSTRENP LLGPSSLTLR TMGGLEVKKV VKGDEGWRLL SCNWLHGGVV HLLVNMLTLL FIGMRMEREF GFIRIGLLYL ISGFGGSILS ALFLRSNISV
201: GASGAVFGLL GGMLSEIFIN WTIYSNKVVT IITLVLIVAV NLGLGVLPGV DNFAHIGGFA TGFLLGFVLL IRPHYGWINQ RNAPLGKPHK YKMYQVILWT
301: VSLLLLLGWF IVGLISLFNN VDGNKHCSWC HYLSCVPTSR WSCNREPASC TTTQLGNQLR MTCLRNGKSG SYILANPSDS RINSLCVQLC R
Best Arabidopsis Sequence Match ( AT3G53780.2 )
(BLAST)
001: MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR
Arabidopsis Description
RBL4RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.