CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018974.1-P	Field mustard	plasma membrane	100.0	100.0
CDY40148	Canola	plasma membrane	99.37	99.37
CDY60552	Canola	plasma membrane	92.38	93.27
CDX87921	Canola	plasma membrane	61.27	91.9
AT1G52580.1	Thale cress	cytosol, golgi, plasma membrane	89.52	91.26
VIT_09s0002g06570.t01	Wine grape	plasma membrane	55.56	60.55
KRH09741	Soybean	plasma membrane	60.32	60.13
CDY47350	Canola	plasma membrane	46.67	46.67
CDX78286	Canola	plasma membrane	47.3	45.85
CDY49197	Canola	plasma membrane	46.67	45.79
CDY45976	Canola	plasma membrane	46.03	45.45
CDY67235	Canola	plasma membrane	46.03	45.45
CDX81043	Canola	plasma membrane	46.98	45.4
CDX98992	Canola	plasma membrane	46.98	43.53
CDX70021	Canola	plasma membrane	47.94	43.52
CDY66606	Canola	plasma membrane	41.9	43.42
CDY47879	Canola	plasma membrane	52.06	43.04
CDX70020	Canola	mitochondrion, plasma membrane	43.81	42.59
CDY39528	Canola	plasma membrane	51.43	42.3
CDY41251	Canola	plasma membrane	41.9	42.17
CDY53134	Canola	plasma membrane	41.59	41.72
GSMUA_Achr2P08240_001	Banana	plasma membrane	45.4	39.07
CDY60266	Canola	plasma membrane	43.49	38.27
CDX78204	Canola	plasma membrane	46.98	37.85
CDY65838	Canola	plasma membrane	46.98	37.85
CDX76189	Canola	cytosol, peroxisome, plasma membrane	46.35	37.34
CDY30844	Canola	cytosol, peroxisome, plasma membrane	46.35	37.34
CDX98993	Canola	cytosol	37.14	36.79
CDX73525	Canola	plasma membrane	46.35	36.32
CDX87497	Canola	plasma membrane	34.6	28.24
CDX88394	Canola	plasma membrane	34.29	27.84

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:A0A078JE71	UniProt:A0A078JE71	EnsemblPlants:CDY65908	ProteinID:CDY65908
ProteinID:CDY65908.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00050987001	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF64
InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000253E89D
SEG:seg	:	:	:	:	:

Description

BnaA06g01900DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE71]

Coordinates

chrLK034996:-:13890..15562

Molecular Weight (calculated)

35081.6 Da

IEP (calculated)

9.234

GRAVY (calculated)

0.285

Length

315 amino acids

Sequence
(BLAST)

001: MGKRPPIPPD IENGTPPLPP LPPPARPPFR PPIPVPWYAW LVPLIFAANF ITFATTMYVN DCPSRSDNCL LFDVLGRLSF QPIKENMLLG PSIPTLRRLG
101: ALERRLVEEG EKWRLISCIW LHGGLLHLLA NMISLLCIGM RLEQEFGFLR IGALYVISGL GGSIMSCLTD SRGERVSVGA SGALFGLLGA MLSELITNWT
201: IYENKCTSLM TLILIIALNL SVGFLPRVDN SAHCGGFLAG FFLGFVLLLR PQYGYVNPKY IPPGYDVKHR KSRHKCYQHV FRFTSLAILL AGFIAGYTKL
301: LREHTVESVP FRDVN

Best Arabidopsis Sequence Match ( AT1G52580.1 )
(BLAST)

001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN

Arabidopsis Description

RBL5RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.