Factsheet for GSMUA_Achr2P08240_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06570.t01	Wine grape	plasma membrane	41.53	52.6
GSMUA_Achr5P20070_001	Banana	plasma membrane	28.69	51.22
CDX87921	Canola	plasma membrane	28.14	49.05
Bra030374.1-P	Field mustard	plasma membrane	41.53	48.72
CDY60552	Canola	plasma membrane	41.53	48.72
AT1G52580.1	Thale cress	cytosol, golgi, plasma membrane	40.44	47.9
GSMUA_Achr1P07920_001	Banana	plasma membrane	40.98	46.73
KRH09741	Soybean	plasma membrane	39.34	45.57
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	39.89	45.48
Bra018974.1-P	Field mustard	plasma membrane	39.07	45.4
CDY65908	Canola	plasma membrane	39.07	45.4
CDY40148	Canola	plasma membrane	39.07	45.4
GSMUA_Achr9P20880_001	Banana	plasma membrane	38.52	43.79
GSMUA_Achr11P...	Banana	cytosol	39.07	42.56
GSMUA_Achr10P...	Banana	plasma membrane	26.78	40.16
GSMUA_Achr6P34110_001	Banana	plasma membrane	41.26	38.72
GSMUA_Achr5P20060_001	Banana	cytosol	4.64	30.91
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	37.43	27.29
GSMUA_Achr10P...	Banana	cytosol	3.55	13.0

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G08240_001	EnsemblPlants:GSMUA_Achr2P08240_001	EnsemblPlants:GSMUA_Achr2T08240_001	InterPro:IPR035952
UniProt:M0S665	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002968BD2	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G08240_001]

Coordinates

chr2:+:12309626..12314089

Molecular Weight (calculated)

40534.5 Da

IEP (calculated)

9.821

GRAVY (calculated)

0.490

Length

366 amino acids

Sequence
(BLAST)

001: MYSVLHVFGS GGSLLPLSLI GWLSFPVALC LLTTFVQEDR ARVAFFPPVS CCRRTKQEED GEEGFVFASY ERLGRWPKRP VGGTVPPAAS GDVGGVVGAP
101: HRPRQHCLLR LHHVCQRLPL HPPPRGLRLR LPFPWPIRFR ALLHQPAPWS LPLHVSSLGA LDYNKVVVEG ERWRLLACIW LHAGVIHLLA NMLSLLFTGV
201: RLEQEFGFVK IGLLYVLSGI GGSLMSCFSI QSNISVGASG ALFGLLGAML SELITNWTIY SNKCAALLTL MVVIAINLVV GVVPHVDSSA HIGGFVSGFL
301: LGFVLLMRPQ FGWISRRHIP PGYNMELIRP KHNLCQYLLW FTALVVLIIG FLFGLIKLSY VDRQLH

Best Arabidopsis Sequence Match ( AT1G52580.1 )
(BLAST)

001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN

Arabidopsis Description

RBL5RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.