Factsheet for GSMUA_Achr5P20070_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	84.88	51.79
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	73.17	46.73
GSMUA_Achr1P07920_001	Banana	plasma membrane	70.24	44.86
GSMUA_Achr9P20880_001	Banana	plasma membrane	68.29	43.48
GSMUA_Achr10P...	Banana	plasma membrane	51.22	43.03
VIT_06s0004g04890.t01	Wine grape	plasma membrane	69.76	36.57
GSMUA_Achr6P34110_001	Banana	plasma membrane	66.34	34.87
CDY47879	Canola	plasma membrane	63.9	34.38
CDY39528	Canola	plasma membrane	63.9	34.2
KRH10251	Soybean	plasma membrane	64.39	33.93
AT2G29050.1	Thale cress	golgi, peroxisome, plasma membrane, plastid	64.39	33.93
KRH23080	Soybean	plasma membrane	63.9	33.42
Bra028389.1-P	Field mustard	plasma membrane	63.9	32.83
GSMUA_Achr2P08240_001	Banana	plasma membrane	51.22	28.69
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	64.39	26.29
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
GSMUA_Achr5P20060_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G20070_001	EnsemblPlants:GSMUA_Achr5P20070_001	EnsemblPlants:GSMUA_Achr5T20070_001	InterPro:IPR035952
UniProt:M0T036	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF65	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002961006	SEG:seg	:

Description

Putative Rhomboid family member 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G20070_001]

Coordinates

chr5:+:21698868..21703703

Molecular Weight (calculated)

22962.8 Da

IEP (calculated)

8.630

GRAVY (calculated)

0.782

Length

205 amino acids

Sequence
(BLAST)

001: MWLHAGLIHL LANMLRLVFI GIHLEQQFGF IWIGIIYLLF GFGGSILSSL FIRNSISVGA SGAMFGLLGA MLSELITNWT IYTNKASSLF TLLVIIMFNL
101: AVGILPHVDN YSHIGGFLTG FLLGFVLLIQ PQFGWLEGHN LPPTDRVKSK YMAYQYILWV MSLILLGIGL IVGLVMPFRG VNGNDHCHWC HYLSCLPTSR
201: WSCRN

Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)

001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC

Arabidopsis Description

RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.