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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY47879 Canola plasma membrane 96.61 97.11
AT2G29050.1 Thale cress golgi, peroxisome, plasma membrane, plastid 87.47 86.12
VIT_06s0004g04890.t01 Wine grape plasma membrane 68.93 67.52
KRH10251 Soybean plasma membrane 66.32 65.3
Os01t0147300-01 Rice plasma membrane 34.46 64.71
GSMUA_Achr5P20070_001 Banana plasma membrane 34.2 63.9
KRH23080 Soybean plasma membrane 65.27 63.78
TraesCS4A01G176100.1 Wheat plasma membrane 52.22 63.09
CDY45976 Canola plasma membrane 51.44 61.76
CDY47350 Canola plasma membrane 50.65 61.59
CDY67235 Canola plasma membrane 51.17 61.44
CDY49197 Canola plasma membrane 50.39 60.12
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 46.48 58.36
Os11t0704800-01 Rice plasma membrane 56.4 57.75
CDY66606 Canola plasma membrane 45.43 57.24
TraesCS3B01G085300.1 Wheat plasma membrane 55.87 57.22
TraesCS3A01G071500.1 Wheat plasma membrane 55.61 56.95
CDX78286 Canola plasma membrane 48.3 56.92
CDX98992 Canola plasma membrane 50.39 56.76
HORVU4Hr1G027850.1 Barley peroxisome 55.35 55.94
CDX81043 Canola plasma membrane 47.52 55.83
TraesCS4D01G136600.2 Wheat plasma membrane 55.09 55.53
CDX70021 Canola plasma membrane 50.13 55.33
TraesCS4B01G141600.1 Wheat plasma membrane 55.09 54.81
CDX70020 Canola mitochondrion, plasma membrane 46.21 54.63
GSMUA_Achr5P20060_001 Banana cytosol 7.57 52.73
EES00318 Sorghum golgi, peroxisome, plasma membrane 57.44 52.26
CDY60552 Canola plasma membrane 42.56 52.24
CDY41251 Canola plasma membrane 42.56 52.08
CDY40148 Canola plasma membrane 42.56 51.75
CDY65838 Canola plasma membrane 52.74 51.66
CDX78204 Canola plasma membrane 52.74 51.66
CDY53134 Canola plasma membrane 42.3 51.59
CDY65908 Canola plasma membrane 42.3 51.43
CDX87921 Canola plasma membrane 27.94 50.95
CDY60266 Canola plasma membrane 47.26 50.56
CDX98993 Canola cytosol 41.78 50.31
CDX73525 Canola plasma membrane 52.22 49.75
CDY30844 Canola cytosol, peroxisome, plasma membrane 50.65 49.62
CDX76189 Canola cytosol, peroxisome, plasma membrane 50.65 49.62
Zm00001d048606_P001 Maize cytosol, nucleus, plasma membrane 50.91 48.63
OQU84103 Sorghum golgi, peroxisome, plasma membrane, plastid 51.17 45.48
Zm00001d039870_P002 Maize plasma membrane 58.22 44.42
CDX87497 Canola plasma membrane 37.86 37.56
CDX88394 Canola plasma membrane 37.08 36.6
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078HS18UniProt:A0A078HS18EnsemblPlants:CDY39528ProteinID:CDY39528
ProteinID:CDY39528.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00068061001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF46
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EE84BF
SEG:seg:::::
Description
BnaC04g15270DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS18]
Coordinates
chrLK032450:+:252729..254706
Molecular Weight (calculated)
42618.4 Da
IEP (calculated)
9.641
GRAVY (calculated)
0.262
Length
383 amino acids
Sequence
(BLAST)
001: MSRDRREGLE IKVVDPPTSN VSAAQTSAGA RGGRQRASFA EFRPFKLWFP WLVPAIVVSN IVLFAVSMFI NDCPKNSQKC SARFLGRFAF QPMKENPLLG
101: PSSTTLEKMG ALEVTMVVDK HQVWRLFTCI WLHAGVFHVL ANMLSLIFIG IRLEQEFGFV RIGLLYMISG FGGSLLSSLF NREGISVGAS GALFGLLGAM
201: LSELLTNWTI YANKFAALLT LIFIIAINLA VGILPHVDNF AHLGGFTSGF LLGFVFLIRP QYGYFNQRNN PRGYAAPSAK SKHKPYQYVL WITSLLLLIA
301: GYTVGLIVLL RGTDLNKHCS WCHYLSCMPT SLWNCKSQNM YCKSSQIGKQ MNLTCIANGR TEMYTLGNEN QSQIQQMCSQ LCS
Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [golgi,plasma membrane,peroxisome,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.