Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0147300-01 | Rice | plasma membrane | 40.86 | 84.31 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 58.43 | 80.66 |
| TraesCS3B01G085300.1 | Wheat | plasma membrane | 71.02 | 79.95 |
| TraesCS3A01G071500.1 | Wheat | plasma membrane | 70.07 | 78.88 |
| Zm00001d039870_P002 | Maize | plasma membrane | 91.69 | 76.89 |
| KRH66050 | Soybean | plasma membrane | 55.11 | 60.26 |
| KRG99546 | Soybean | plasma membrane | 54.39 | 59.64 |
| CDY47879 | Canola | plasma membrane | 52.49 | 58.01 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 53.21 | 57.58 |
| CDY39528 | Canola | plasma membrane | 52.26 | 57.44 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 52.97 | 57.03 |
| KRH10251 | Soybean | plasma membrane | 52.26 | 56.56 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 52.02 | 56.44 |
| KRH23080 | Soybean | plasma membrane | 51.54 | 55.36 |
| Bra028389.1-P | Field mustard | plasma membrane | 52.26 | 55.14 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 43.23 | 54.33 |
| PGSC0003DMT400011238 | Potato | plasma membrane | 49.41 | 53.75 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 41.33 | 53.54 |
| Solyc06g005580.2.1 | Tomato | plasma membrane | 49.17 | 53.49 |
| AT3G53780.2 | Thale cress | plasma membrane | 49.64 | 53.05 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 48.46 | 51.52 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 39.67 | 51.23 |
| CDX78204 | Canola | plasma membrane | 47.51 | 51.15 |
| CDY65838 | Canola | plasma membrane | 47.51 | 51.15 |
| KRH49106 | Soybean | plasma membrane | 32.3 | 50.75 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 46.56 | 50.13 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 46.56 | 50.13 |
| EES11282 | Sorghum | cytosol | 40.38 | 50.0 |
| CDX73525 | Canola | plasma membrane | 47.03 | 49.25 |
| OQU84103 | Sorghum | golgi, peroxisome, plasma membrane, plastid | 47.74 | 46.64 |
| Bra014862.1-P | Field mustard | cytosol | 46.08 | 45.75 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | UniProt:C5XQ04 | EnsemblPlants:EES00318 | ProteinID:EES00318 | ProteinID:EES00318.2 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF46 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom |
| InterPro:Rhomboid-like_sf | EnsemblPlantsGene:SORBI_3003G072900 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI00081AD7DB | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:6189019..6192192
Molecular Weight (calculated)
45327.7 Da
IEP (calculated)
8.922
GRAVY (calculated)
0.310
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRGETAVV PIDVASGGGG GGGRGEERPK GERHRSHGPG HHHGRHGQHR SRPPPPPPPT FRPFRRWFPF LVPLFILANV VLFVLTMYVN DCPAHARATG
101: AAIGGSVGES ATAQGCLLAP ELGRFAFQSF KENPLIGPTS ATLLEMGALE TSKVTKDHEG WRLITCIWLH AGVIHILANM LSLLMIGIRL EKEFGFIRIG
201: TLYVISGVGG SLLSSLFMVS NISVGASGAL FGLLGSMLSE LITNWTIYEN KFAALLTLVM IIVINLAVGI LPHVDNFAHL GGFMSGFCLG FVLLIRPQFG
301: YINQKNSPLG FPAGVTKQKF KIYQIVLLVI ATMMIVSGFT VGLVLLFQGF NASEHCSWCH YLSCVPTSKW SCNAPNNYCM SSQLGNQLNL TCESTGKTAT
401: YVLSNPNSTE AIKNLCVGLC G
101: AAIGGSVGES ATAQGCLLAP ELGRFAFQSF KENPLIGPTS ATLLEMGALE TSKVTKDHEG WRLITCIWLH AGVIHILANM LSLLMIGIRL EKEFGFIRIG
201: TLYVISGVGG SLLSSLFMVS NISVGASGAL FGLLGSMLSE LITNWTIYEN KFAALLTLVM IIVINLAVGI LPHVDNFAHL GGFMSGFCLG FVLLIRPQFG
301: YINQKNSPLG FPAGVTKQKF KIYQIVLLVI ATMMIVSGFT VGLVLLFQGF NASEHCSWCH YLSCVPTSKW SCNAPNNYCM SSQLGNQLNL TCESTGKTAT
401: YVLSNPNSTE AIKNLCVGLC G
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.