Factsheet for PGSC0003DMT400011238

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005580.2.1	Tomato	plasma membrane	96.9	96.9
Os01t0147300-01	Rice	plasma membrane	32.04	60.78
TraesCS3D01G070700.1	Wheat	mitochondrion, plasma membrane	44.7	56.72
PGSC0003DMT400022764	Potato	plasma membrane	56.07	56.22
PGSC0003DMT400007890	Potato	plasma membrane	47.8	56.06
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	45.99	55.97
TraesCS3A01G071500.1	Wheat	plasma membrane	53.23	55.08
TraesCS3B01G085300.1	Wheat	plasma membrane	53.23	55.08
EES00318	Sorghum	golgi, peroxisome, plasma membrane	53.75	49.41
Zm00001d039870_P002	Maize	plasma membrane	54.52	42.03
PGSC0003DMT400016755	Potato	cytosol	32.82	33.07

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
InterPro:IPR035952	UniProt:M0ZZ91	PFAM:PF01694	EnsemblPlantsGene:PGSC0003DMG400004402	PGSC:PGSC0003DMG400004402	EnsemblPlants:PGSC0003DMT400011238
PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.A02
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002962A8F	SEG:seg	:	:

Description

Membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004402]

Coordinates

chr6:+:4779293..4783945

Molecular Weight (calculated)

43055.0 Da

IEP (calculated)

8.764

GRAVY (calculated)

0.267

Length

387 amino acids

Sequence
(BLAST)

001: MGRKTPSGNS SSESDLEIKV QPRNSGPEEH DQRLHSRPPQ IPPPNYQPYK KWPPWLVPII IIVNIVLFIF VMYVNDCPHN SNNCFGIDFF GRYAFQDVHE
101: NPLLGPSTTT LQKLGALDVN KVVEGKQIWR LFSCMWLHAG VFHVAANMLS LLFVGIRLEQ EFGFLRIGPL YVLAGVGGSL LSALFVRKKI SVGASGALFG
201: LLGAMLSELI TNWTLYENKL ATLLTLLLII ALNLAVGILP HVDNFAHLGG FVTGFLLGCV LLLRPQFGWV NLNKAPPGYF VASKKSKYKI YQYILLMFSL
301: AFLLTGFILG LALLTNGWDG NAHCSWCHYL SCVPTPLWSC TEARCATIQL GNQLNMTCTS NHKNGTYMLT NPNNTFEIQM LCSKLCK

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.