Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G085300.1 | Wheat | plasma membrane | 98.66 | 98.66 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 79.14 | 97.05 |
| Os01t0147300-01 | Rice | plasma membrane | 41.71 | 76.47 |
| EES00318 | Sorghum | golgi, peroxisome, plasma membrane | 78.88 | 70.07 |
| Zm00001d039870_P002 | Maize | plasma membrane | 78.34 | 58.37 |
| TraesCS4A01G176100.1 | Wheat | plasma membrane | 48.93 | 57.73 |
| CDY47879 | Canola | plasma membrane | 57.75 | 56.69 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 58.82 | 56.56 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 58.82 | 56.27 |
| KRH66050 | Soybean | plasma membrane | 57.75 | 56.1 |
| KRG99546 | Soybean | plasma membrane | 57.49 | 55.99 |
| CDY39528 | Canola | plasma membrane | 56.95 | 55.61 |
| KRH10251 | Soybean | plasma membrane | 57.22 | 55.01 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 28.07 | 54.69 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 56.68 | 54.64 |
| KRH23080 | Soybean | plasma membrane | 57.22 | 54.59 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 46.79 | 54.35 |
| Bra028389.1-P | Field mustard | plasma membrane | 57.49 | 53.88 |
| PGSC0003DMT400011238 | Potato | plasma membrane | 55.08 | 53.23 |
| Solyc06g005580.2.1 | Tomato | plasma membrane | 55.08 | 53.23 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 45.19 | 52.32 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 44.38 | 50.76 |
| KRH49106 | Soybean | plasma membrane | 36.36 | 50.75 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 52.67 | 49.75 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 43.85 | 49.4 |
| AT3G53780.2 | Thale cress | plasma membrane | 50.53 | 47.97 |
| CDY65838 | Canola | plasma membrane | 49.47 | 47.31 |
| CDX78204 | Canola | plasma membrane | 49.47 | 47.31 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 43.05 | 47.21 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 48.66 | 46.55 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 48.66 | 46.55 |
| CDX73525 | Canola | plasma membrane | 49.47 | 46.02 |
| Bra014862.1-P | Field mustard | cytosol | 48.13 | 42.45 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF46 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3A01G071500 | EnsemblPlants:TraesCS3A01G071500.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:44429022..44431345
Molecular Weight (calculated)
40760.2 Da
IEP (calculated)
8.126
GRAVY (calculated)
0.497
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRRGETQEF RPFRRWFPFL VPLFVAANIA LFVRTMYVND CPAHAAAAAA AIGDSVGGAA RAAAAHGCML EPDLGRYAFQ PYKENPLVGP TSATLLEMGA
101: LETGKVARDH EWWRLITCIW LHAGVIHILA NMLSLLMIGI RLEKEFGFLR IGTLYVISGV GGSLLSALFM VSNISVGASG ALFGLLGSML SELITNWTIY
201: ENKCAALLTL VMIIVINLAV GILPHVDNFA HIGGFVSSFF LGFVLLMRPQ FGYINQKNSR LGVHSATPKS KYKIYQIVLL VIALVILICG FITGFVLLMH
301: GFDASQQCSW CHYLSCVPTS QWDCNKAPSN YCLSSQLGDQ LNLTCQSTGK TETYVISSPS NPEAVKHLCL GLCS
101: LETGKVARDH EWWRLITCIW LHAGVIHILA NMLSLLMIGI RLEKEFGFLR IGTLYVISGV GGSLLSALFM VSNISVGASG ALFGLLGSML SELITNWTIY
201: ENKCAALLTL VMIIVINLAV GILPHVDNFA HIGGFVSSFF LGFVLLMRPQ FGYINQKNSR LGVHSATPKS KYKIYQIVLL VIALVILICG FITGFVLLMH
301: GFDASQQCSW CHYLSCVPTS QWDCNKAPSN YCLSSQLGDQ LNLTCQSTGK TETYVISSPS NPEAVKHLCL GLCS
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.