Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011238 | Potato | plasma membrane | 96.9 | 96.9 |
| Os01t0147300-01 | Rice | plasma membrane | 31.78 | 60.29 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 44.7 | 56.72 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 45.99 | 55.97 |
| Solyc09g010880.2.1 | Tomato | extracellular | 55.04 | 55.61 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 47.8 | 55.56 |
| TraesCS3A01G071500.1 | Wheat | plasma membrane | 53.23 | 55.08 |
| TraesCS3B01G085300.1 | Wheat | plasma membrane | 53.23 | 55.08 |
| EES00318 | Sorghum | golgi, peroxisome, plasma membrane | 53.49 | 49.17 |
| Zm00001d039870_P002 | Maize | plasma membrane | 54.26 | 41.83 |
| Solyc11g013320.1.1 | Tomato | plasma membrane | 33.85 | 34.03 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR035952 | UniProt:K4C340 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF46 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.A02 | SUPFAM:SSF144091 | EnsemblPlantsGene:Solyc06g005580.2 | EnsemblPlants:Solyc06g005580.2.1 |
| TMHMM:TMhelix | UniParc:UPI0002765D1D | SEG:seg | : | : | : |
Description
RHOMBOID-like protein 1 [Source:Projected from Arabidopsis thaliana (AT2G29050) UniProtKB/Swiss-Prot;Acc:Q0WQX7]
Coordinates
chr6:-:622867..627021
Molecular Weight (calculated)
43054.0 Da
IEP (calculated)
8.645
GRAVY (calculated)
0.323
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKTPSGNS SSESDLEIKV QPRNISLEER DQRLHSYPPQ IPPPNYQPYK RWAPWLVPII IIVNIVLFIF VMYVNDCPHN GNNCFGIDFF GRYAFQDVHE
101: NPLLGPSTTT LQKLGALDVN KVVDGKQIWR LFSCMWLHAG VFHVAANMLS LLFVGIRLEQ EFGFLRIGPL YVLAGVGGSL LSALFVRKKI SVGASGALFG
201: LLGAMLSELI TNWTLYENKL ATLLTLLLII ALNLAVGILP HVDNFAHVGG FVTGFLLGCV LLLRPQFGWV NLNKAPPGYF VAAKKSKYKI YQYILLMFSL
301: AFLLTGFILG LALLTNGWDG NAHCSWCHYL SCVPTPLWSC TEARCATIQL GNQLNMTCTS NHKNGTYMLT NPNNTFEIQM LCSKLCT
101: NPLLGPSTTT LQKLGALDVN KVVDGKQIWR LFSCMWLHAG VFHVAANMLS LLFVGIRLEQ EFGFLRIGPL YVLAGVGGSL LSALFVRKKI SVGASGALFG
201: LLGAMLSELI TNWTLYENKL ATLLTLLLII ALNLAVGILP HVDNFAHVGG FVTGFLLGCV LLLRPQFGWV NLNKAPPGYF VAAKKSKYKI YQYILLMFSL
301: AFLLTGFILG LALLTNGWDG NAHCSWCHYL SCVPTPLWSC TEARCATIQL GNQLNMTCTS NHKNGTYMLT NPNNTFEIQM LCSKLCT
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.