Factsheet for Solyc09g010880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plasma membrane 4
plastid 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022764	Potato	plasma membrane	97.13	96.37
VIT_08s0007g00470.t01	Wine grape	plasma membrane	71.28	70.36
KRG99546	Soybean	plasma membrane	66.84	66.67
KRH66050	Soybean	plasma membrane	66.58	66.23
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	61.88	59.85
Solyc03g026080.2.1	Tomato	plasma membrane	49.35	59.43
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	50.13	57.66
KRH49106	Soybean	plasma membrane	40.21	57.46
CDY65838	Canola	plasma membrane	57.96	56.78
CDX78204	Canola	plasma membrane	57.96	56.78
CDY30844	Canola	cytosol, peroxisome, plasma membrane	57.7	56.52
CDX76189	Canola	cytosol, peroxisome, plasma membrane	57.44	56.27
AT3G53780.2	Thale cress	plasma membrane	56.92	55.33
Solyc06g005580.2.1	Tomato	plasma membrane	55.61	55.04
CDX73525	Canola	plasma membrane	56.92	54.23
Bra014862.1-P	Field mustard	cytosol	57.18	51.65
Solyc11g013320.1.1	Tomato	plasma membrane	39.16	38.96

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952
UniProt:K4CRB4	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF38	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	MEROPS:S54.015	SUPFAM:SSF144091	EnsemblPlantsGene:Solyc09g010880.2	EnsemblPlants:Solyc09g010880.2.1	TMHMM:TMhelix
UniParc:UPI000276AF36	SEG:seg	:	:	:	:

Description

RHOMBOID-like protein 4 [Source:Projected from Arabidopsis thaliana (AT3G53780) UniProtKB/Swiss-Prot;Acc:F4JBM4]

Coordinates

chr9:-:4210208..4220467

Molecular Weight (calculated)

42422.3 Da

IEP (calculated)

9.400

GRAVY (calculated)

0.427

Length

383 amino acids

Sequence
(BLAST)

001: MAGGAHSQPE IQIQVHSRKG GNSVYPVEPA MTTTGGPAFY REIKHFKKWF PWLIPSFVIV NVVTFLVTMY VNNCPNNSVS CYAGFLGRFS FQPFSENPLL
101: GPSSTTLEKM GALDVNKVVR EHQGWRLFTC MWLHGGVFHL LANMLSLLVI GIRLEREFGF VRIGVLYIIA GLGGSLFSAL FIKSNISVGA SGALFGLLGS
201: MLSELIINWT IYANKIAVLV TLVVIIIINL AVGLLPHVDN FAHIGGFVSG FLLGFVFLIR PQFGWVSQKY ASRTYSASAK PKFKMYQMVL WVVSLILLII
301: GFTSGLVMLF RGVDLNDHCS WCHYMSCLPT SRWSCNTEPV SCMSEQTINQ LTLTCSNSNK TRTYPLSNPS TSKIQGLCTQ LCR

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.