Factsheet for Bra014862.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76189	Canola	cytosol, peroxisome, plasma membrane	89.62	97.19
CDY30844	Canola	cytosol, peroxisome, plasma membrane	88.68	96.16
AT3G53780.2	Thale cress	plasma membrane	79.95	86.04
Solyc09g010880.2.1	Tomato	extracellular	51.65	57.18
TraesCS4A01G176100.1	Wheat	plasma membrane	42.69	57.1
PGSC0003DMT400022764	Potato	plasma membrane	51.89	56.99
KRH66050	Soybean	plasma membrane	51.18	56.36
Bra027622.1-P	Field mustard	plasma membrane	41.04	55.41
VIT_08s0007g00470.t01	Wine grape	plasma membrane	50.71	55.41
KRG99546	Soybean	plasma membrane	50.0	55.21
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	40.57	53.92
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	50.0	53.54
Bra019783.1-P	Field mustard	plasma membrane	38.21	53.29
Os01t0147300-01	Rice	plasma membrane	25.47	52.94
KRH49106	Soybean	plasma membrane	33.25	52.61
TraesCS4D01G136600.2	Wheat	plasma membrane	46.46	51.84
Bra013673.1-P	Field mustard	plasma membrane	34.43	51.77
HORVU4Hr1G027850.1	Barley	peroxisome	46.23	51.72
TraesCS4B01G141600.1	Wheat	plasma membrane	46.46	51.17
Os11t0704800-01	Rice	plasma membrane	44.58	50.53
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	40.8	49.86
TraesCS3D01G070700.1	Wheat	mitochondrion, plasma membrane	35.85	49.84
Bra005930.1-P	Field mustard	plasma membrane	37.26	48.62
TraesCS3A01G071500.1	Wheat	plasma membrane	42.45	48.13
TraesCS3B01G085300.1	Wheat	plasma membrane	42.45	48.13
Bra028389.1-P	Field mustard	plasma membrane	45.28	48.12
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	44.81	47.38
Bra030374.1-P	Field mustard	plasma membrane	34.2	46.47
EES00318	Sorghum	golgi, peroxisome, plasma membrane	45.75	46.08
Bra018974.1-P	Field mustard	plasma membrane	33.73	45.4
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	45.28	44.55
Bra009280.1-P	Field mustard	cytosol	38.21	43.43
Zm00001d039870_P002	Maize	plasma membrane	46.93	39.64
Bra015649.1-P	Field mustard	plasma membrane	32.78	36.01

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EnsemblPlantsGene:Bra014862	EnsemblPlants:Bra014862.1	EnsemblPlants:Bra014862.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009506	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	UniProt:M4DEE1	PFAM:PF01694	PANTHER:PTHR22936
PANTHER:PTHR22936:SF38	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix
UniParc:UPI0002545271	SEG:seg	:	:	:	:

Description

AT3G53780 (E=4e-106) ATRBL4 | rhomboid family protein

Coordinates

chrA04:+:3686979..3689061

Molecular Weight (calculated)

47210.3 Da

IEP (calculated)

9.347

GRAVY (calculated)

0.077

Length

424 amino acids

Sequence
(BLAST)

001: MGEKESETAP IWGRTRQSEN NNIHPMDVES SALSEQHRSQ NRSRGSSYEE RGRGVKEFRS WFSWLIPCFV IANVVVFVIT MYVNNCPKKS GDCFAGFLGR
101: FSFQSTRENP LLGPSSLTLR TMGGLDVKKV VEGDEGWRLL SCNWLHGGVV HLLVNMLTLL FIGMRMEREF GFIRIGLLYL ISGFGGSILS ALFLRSNISV
201: GASGAVFGLL GGMLSEIFIN WTIYTNKTKL FKEGTITVKM VALSASHCST SKFSRTWQLD KRFFTNSPLG YFINLGLGVL PGVDNFAHIG GFATGFLLGF
301: VLLIRPHYGW INQRSDPAAK PHKYNICQAI LWTVSLLLLL GWFIAGLISL FNNVDGNKHC SWCHYLSCVP TSRWSCNREP ASCTTTQLGN QLSMTCLRNG
401: KSGSYILANP SDSRINSLCV QLCR

Best Arabidopsis Sequence Match ( AT3G53780.2 )
(BLAST)

001: MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR

Arabidopsis Description

RBL4RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.