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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07250.1 Bra027174.1-P AT3G16310.1 21798944
AT5G07250.1 Bra002403.1-P AT5G22290.1 21798944
AT5G07250.1 Bra006619.1-P AT5G22290.1 21798944
AT5G07250.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70021 Canola plasma membrane 99.14 99.14
CDX98992 Canola plasma membrane 93.95 95.88
AT5G07250.1 Thale cress plasma membrane 82.71 82.95
Bra005930.1-P Field mustard plasma membrane 73.78 78.77
Bra009280.1-P Field mustard cytosol 75.22 69.97
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 62.54 68.24
Solyc03g026080.2.1 Tomato plasma membrane 62.25 67.92
KRH09112 Soybean plasma membrane 63.4 66.87
VIT_16s0100g00640.t01 Wine grape plasma membrane 62.25 66.46
KRG91456 Soybean cytosol, golgi, plasma membrane 62.82 66.26
TraesCS5D01G320400.1 Wheat plasma membrane 61.1 66.25
TraesCS5A01G314000.1 Wheat plasma membrane 61.1 65.84
KRH38564 Soybean plasma membrane 62.54 65.76
HORVU5Hr1G080690.2 Barley plasma membrane 60.81 65.73
TraesCS5B01G314900.1 Wheat plasma membrane 61.1 65.63
KRH35359 Soybean cytosol, golgi, plasma membrane 61.96 65.15
GSMUA_Achr11P... Banana cytosol 62.82 64.88
Os09t0525900-01 Rice plasma membrane 59.94 64.4
Os08t0546700-01 Rice plasma membrane 59.94 64.4
Zm00001d021231_P002 Maize plasma membrane 59.94 64.2
Zm00001d052734_P002 Maize plasma membrane 59.08 63.66
EER99221 Sorghum cytosol, peroxisome, plasma membrane 59.37 63.38
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 59.08 63.08
Zm00001d006179_P002 Maize plasma membrane 59.37 63.0
Bra027622.1-P Field mustard plasma membrane 56.77 62.74
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 57.64 62.7
Zm00001d029668_P001 Maize plasma membrane 60.23 62.57
Zm00001d029667_P001 Maize plasma membrane 60.23 62.57
Os10t0521900-01 Rice plasma membrane 59.65 62.35
TraesCS7A01G269900.1 Wheat plasma membrane 57.93 62.23
TraesCS7D01G270400.1 Wheat plasma membrane 58.79 62.2
TraesCS7B01G168100.1 Wheat plasma membrane 58.79 62.2
HORVU7Hr1G056630.1 Barley plasma membrane 58.21 61.96
EER94630 Sorghum cytosol, golgi, plasma membrane 59.37 61.49
TraesCS1B01G196600.1 Wheat plasma membrane 57.06 60.74
TraesCS1D01G187500.1 Wheat plasma membrane 56.48 60.68
HORVU1Hr1G048610.3 Barley plasma membrane 56.77 60.62
TraesCS5A01G526000.1 Wheat plasma membrane 57.93 60.54
TraesCS1A01G188900.1 Wheat plasma membrane 56.77 60.24
EER95642 Sorghum cytosol, golgi, plasma membrane 56.48 60.12
TraesCS4D01G350300.1 Wheat plasma membrane 57.64 60.06
TraesCS4B01G356600.1 Wheat plasma membrane 57.35 59.58
TraesCS4A01G179600.1 Wheat plasma membrane 32.85 59.38
Bra019783.1-P Field mustard plasma membrane 51.87 59.21
Zm00001d027355_P001 Maize plasma membrane 54.76 59.01
Os04t0569300-01 Rice cytosol 55.33 56.14
EES11282 Sorghum cytosol 54.47 55.59
Zm00001d002632_P001 Maize plasma membrane 53.89 55.0
TraesCS2B01G419100.1 Wheat plasma membrane 53.03 54.44
Bra013673.1-P Field mustard plasma membrane 44.09 54.26
TraesCS2D01G398500.1 Wheat plasma membrane 52.74 53.98
TraesCS2A01G401000.1 Wheat plasma membrane 53.03 53.96
HORVU4Hr1G086150.3 Barley plastid 57.35 51.29
Bra030374.1-P Field mustard plasma membrane 44.67 49.68
Bra028389.1-P Field mustard plasma membrane 55.33 48.12
Bra018974.1-P Field mustard plasma membrane 43.23 47.62
HORVU0Hr1G006330.1 Barley plastid 18.73 42.76
HORVU3Hr1G029090.1 Barley plastid 18.73 42.76
HORVU2Hr1G095170.6 Barley mitochondrion 44.67 42.01
Bra014862.1-P Field mustard cytosol 49.86 40.8
Bra015649.1-P Field mustard plasma membrane 36.89 33.16
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6EnsemblPlantsGene:Bra009279EnsemblPlants:Bra009279.1EnsemblPlants:Bra009279.1-PGO:GO:0003674
GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150GO:GO:0008152
GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538InterPro:IPR035952
UniProt:M4CYI2PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF62InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI000254379CSEG:seg:
Description
AT5G07250 (E=9e-117) ATRBL3 | ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)
Coordinates
chrA10:+:15957004..15958549
Molecular Weight (calculated)
38511.4 Da
IEP (calculated)
9.473
GRAVY (calculated)
0.326
Length
347 amino acids
Sequence
(BLAST)
001: MAIGDDDLEN RMSAKHHHHR GIGSKGGDRT GFGPPPRPAP LVYGGDDALL SSSPQWTSWL VPMFVVANVI VFVVTMFVNN CPAHSHGPNR RCVATFLGRL
101: SFEPLRNNPL FGPSSRTLDK LGSLEWDKVV EKHEGWRLLT CIWLHAGVIH LAANMLSLVF IGIRLEQQFG FVRIGVIYLL SGIGGSVLSS LFIRNSISVG
201: ASGALFGLLG SMLSELLTNW TIYSNKIAAL LTLLFVIAIN LAIGILPHVD NFAHVGGFLT GFLLGFVLLA RPQFKWLARE NMPQGRRLTS KYKPYQYLLW
301: LLSLALLVLG FVMALVLLFK GEDGNDHCRW CRYLRCIPTS RWNCDDV
Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.