CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	EES05123	AT1G27300.1	21798944
AT5G07250.1	EES02290	AT3G16310.1	21798944
AT5G07250.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029668_P001	Maize	plasma membrane	91.64	91.92
Zm00001d029667_P001	Maize	plasma membrane	91.64	91.92
Os10t0521900-01	Rice	plasma membrane	85.67	86.45
TraesCS1D01G187500.1	Wheat	plasma membrane	76.42	79.26
TraesCS1B01G196600.1	Wheat	plasma membrane	76.72	78.83
TraesCS1A01G188900.1	Wheat	plasma membrane	76.72	78.59
HORVU1Hr1G048610.3	Barley	plasma membrane	75.22	77.54
EER95642	Sorghum	cytosol, golgi, plasma membrane	67.76	69.63
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	63.88	65.24
Solyc03g026080.2.1	Tomato	plasma membrane	61.79	65.09
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	61.79	65.09
KRH09112	Soybean	plasma membrane	62.99	64.13
KRH38564	Soybean	plasma membrane	62.39	63.33
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	62.69	63.06
PGSC0003DMT400007890	Potato	plasma membrane	62.09	63.03
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	60.9	62.77
KRG91456	Soybean	cytosol, golgi, plasma membrane	61.19	62.31
VIT_16s0100g00640.t01	Wine grape	plasma membrane	60.3	62.15
KRH35359	Soybean	cytosol, golgi, plasma membrane	60.9	61.82
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	58.81	61.76
CDY45976	Canola	plasma membrane	58.81	61.76
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	58.21	61.51
CDY67235	Canola	plasma membrane	58.51	61.44
CDY47350	Canola	plasma membrane	57.01	60.63
CDX98992	Canola	plasma membrane	61.19	60.29
Bra027622.1-P	Field mustard	plasma membrane	56.42	60.19
CDY49197	Canola	plasma membrane	57.01	59.5
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.49	59.37
CDX70021	Canola	plasma membrane	61.49	59.37
Bra005930.1-P	Field mustard	plasma membrane	57.31	59.08
AT5G07250.1	Thale cress	plasma membrane	60.6	58.67
EES11282	Sorghum	cytosol	59.4	58.53
CDX78286	Canola	plasma membrane	56.42	58.15
AT1G12750.4	Thale cress	plasma membrane	52.84	57.65
CDY66606	Canola	plasma membrane	52.24	57.57
Bra019783.1-P	Field mustard	plasma membrane	52.24	57.57
CDX81043	Canola	plasma membrane	55.82	57.36
CDX70020	Canola	mitochondrion, plasma membrane	54.33	56.17
CDY41251	Canola	plasma membrane	49.55	53.04
CDY53134	Canola	plasma membrane	49.55	52.87
Bra013673.1-P	Field mustard	plasma membrane	44.18	52.48
AT4G23070.1	Thale cress	plasma membrane	48.66	52.08
CDX98993	Canola	cytosol	48.66	51.26
CDY60266	Canola	plasma membrane	53.43	50.0
Bra009280.1-P	Field mustard	cytosol	54.03	48.53
EES00318	Sorghum	golgi, peroxisome, plasma membrane	54.33	43.23
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	55.22	42.92
HORVU3Hr1G029090.1	Barley	plastid	19.1	42.11
HORVU0Hr1G006330.1	Barley	plastid	19.1	42.11

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EntrezGene:8062895	UniProt:C5WUM0	EnsemblPlants:EER94630	ProteinID:EER94630
ProteinID:EER94630.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF63	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	EnsemblPlantsGene:SORBI_3001G321800	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0001A83114
RefSeq:XP_002467632.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:60925416..60927734

Molecular Weight (calculated)

36509.8 Da

IEP (calculated)

9.592

GRAVY (calculated)

0.425

Length

335 amino acids

Sequence
(BLAST)

001: MAAARYDVEK GGRNGEGKQR YSPQAEHLYP PQRDGEREWV PWFVPLVAAV NIVLFAVAMY VNNCPAHASR RGGGGAGACV ARGFLHRFSF QPLSENPLLG
101: PSSATLQKLG ALVWDKVVQE HQGWRLVTCI WLHAGVAHLL ANMVSLVLIG LRLEQQFGYV RIGIIYLVSG VGGSVLSSLF VRNTISVGAS GALFGLLGAM
201: LSELFTNWTI YSNKAAALVT LLIVIAINLA IGILPHVDNF AHIGGFLTGF LLGFVFLMRP HYGWMQRYVL PSDVKYTSKK YLAYQWALLA VASVLAVVGF
301: AVGLGMLFRG VNANDHCGWC HYLSCVPTSR WSCGK

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.