Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49197 | Canola | plasma membrane | 98.41 | 96.57 |
| CDY45976 | Canola | plasma membrane | 91.11 | 89.97 |
| CDY67235 | Canola | plasma membrane | 90.48 | 89.34 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 88.89 | 88.33 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 69.84 | 67.07 |
| CDY66606 | Canola | plasma membrane | 63.49 | 65.79 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 67.62 | 64.55 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 67.3 | 63.66 |
| Os09t0525900-01 | Rice | plasma membrane | 64.44 | 62.85 |
| Zm00001d052734_P002 | Maize | plasma membrane | 63.81 | 62.42 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 62.86 | 61.88 |
| Zm00001d021231_P002 | Maize | plasma membrane | 63.49 | 61.73 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 62.86 | 61.49 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 62.54 | 61.37 |
| Os08t0546700-01 | Rice | plasma membrane | 62.86 | 61.3 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 62.86 | 61.3 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 62.86 | 60.92 |
| Zm00001d006179_P002 | Maize | plasma membrane | 62.86 | 60.55 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 62.22 | 60.31 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 36.51 | 59.9 |
| Os10t0521900-01 | Rice | plasma membrane | 62.54 | 59.34 |
| CDX98992 | Canola | plasma membrane | 63.81 | 59.12 |
| CDY41251 | Canola | plasma membrane | 58.73 | 59.11 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 60.32 | 58.82 |
| CDY53134 | Canola | plasma membrane | 58.41 | 58.6 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 60.63 | 58.59 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 59.68 | 58.2 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 60.32 | 58.1 |
| Zm00001d029667_P001 | Maize | plasma membrane | 61.59 | 58.08 |
| Zm00001d029668_P001 | Maize | plasma membrane | 61.59 | 58.08 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 60.32 | 57.93 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 60.32 | 57.93 |
| CDX70021 | Canola | plasma membrane | 63.81 | 57.93 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 59.05 | 57.06 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 60.63 | 57.01 |
| CDY60266 | Canola | plasma membrane | 64.76 | 56.98 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 60.0 | 56.93 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 58.1 | 56.48 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 59.68 | 56.46 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 58.41 | 56.44 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 58.1 | 56.31 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 59.68 | 56.29 |
| EES11282 | Sorghum | cytosol | 60.32 | 55.88 |
| CDX78286 | Canola | plasma membrane | 57.14 | 55.38 |
| Zm00001d027355_P001 | Maize | plasma membrane | 56.51 | 55.28 |
| CDX81043 | Canola | plasma membrane | 57.14 | 55.21 |
| Zm00001d002632_P001 | Maize | plasma membrane | 59.05 | 54.71 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 58.1 | 54.14 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 58.1 | 53.98 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 58.41 | 53.96 |
| Os04t0569300-01 | Rice | cytosol | 57.14 | 52.63 |
| CDX87921 | Canola | plasma membrane | 33.97 | 50.95 |
| CDX98993 | Canola | cytosol | 51.43 | 50.94 |
| CDY39528 | Canola | plasma membrane | 61.59 | 50.65 |
| CDY47879 | Canola | plasma membrane | 60.95 | 50.39 |
| HORVU4Hr1G086150.3 | Barley | plastid | 59.37 | 48.2 |
| CDY60552 | Canola | plasma membrane | 47.3 | 47.76 |
| CDY40148 | Canola | plasma membrane | 46.98 | 46.98 |
| CDY65908 | Canola | plasma membrane | 46.67 | 46.67 |
| CDY65838 | Canola | plasma membrane | 57.46 | 46.29 |
| CDX78204 | Canola | plasma membrane | 57.46 | 46.29 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 56.51 | 45.52 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 56.51 | 45.52 |
| CDX73525 | Canola | plasma membrane | 56.83 | 44.53 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 48.25 | 41.19 |
| HORVU0Hr1G006330.1 | Barley | plastid | 17.78 | 36.84 |
| HORVU3Hr1G029090.1 | Barley | plastid | 17.78 | 36.84 |
| CDX87497 | Canola | plasma membrane | 40.95 | 33.42 |
| CDX88394 | Canola | plasma membrane | 39.05 | 31.7 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:A0A078I8U7 | UniProt:A0A078I8U7 | EnsemblPlants:CDY47350 | ProteinID:CDY47350 |
| ProteinID:CDY47350.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00087215001 | InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF63 |
| InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0004EAF919 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng14870DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8U7]
Coordinates
chrLK032710:+:133089..134720
Molecular Weight (calculated)
35096.2 Da
IEP (calculated)
9.314
GRAVY (calculated)
0.403
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRDSERGE GKQNNTNYSY DESSSDTHWT SWLVPLIVVA NLAVFIAVMF VNDCPKKIIG PNKACVARFL GRFSFQPLRE NPLFGPSSST LERMGALEWR
101: KVVHEHQGWR LVTCVWLHAG ILHLLTNMLS LIFIGIRLEQ QFGFIRVGLI YLISGLGGSI LSSLFLQESI SVGASGALFG LLGAMLSELL TNWTIYANKA
201: AALFTLLFII AINLGLGLLP RVDNFAHIGG FITGFCLGFI LLVRPQHGWE SSRTNTSLTK RKYSIYQYVL FIVAVLLLVV CLTVGSVMLF KGENGNKHCK
301: WCHRLSCFPT SKWTC
101: KVVHEHQGWR LVTCVWLHAG ILHLLTNMLS LIFIGIRLEQ QFGFIRVGLI YLISGLGGSI LSSLFLQESI SVGASGALFG LLGAMLSELL TNWTIYANKA
201: AALFTLLFII AINLGLGLLP RVDNFAHIGG FITGFCLGFI LLVRPQHGWE SSRTNTSLTK RKYSIYQYVL FIVAVLLLVV CLTVGSVMLF KGENGNKHCK
301: WCHRLSCFPT SKWTC
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.