CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015649.1-P	Field mustard	plasma membrane	100.0	100.0
CDX88394	Canola	plasma membrane	96.89	96.39
AT1G77860.2	Thale cress	nucleus, peroxisome, plasma membrane	86.27	86.49
KRH64762	Soybean	plasma membrane	50.78	53.26
KRH53148	Soybean	plasma membrane	50.0	51.74
Solyc11g013320.1.1	Tomato	plasma membrane	48.45	48.57
VIT_18s0001g04400.t01	Wine grape	plasma membrane	42.49	47.95
PGSC0003DMT400016755	Potato	cytosol	44.3	44.53
CDY47350	Canola	plasma membrane	33.42	40.95
CDY49197	Canola	plasma membrane	33.42	40.19
CDY67235	Canola	plasma membrane	33.16	40.13
CDY45976	Canola	plasma membrane	32.9	39.81
CDY53134	Canola	plasma membrane	32.38	39.81
CDY41251	Canola	plasma membrane	32.12	39.62
CDY66606	Canola	plasma membrane	31.09	39.47
CDY47879	Canola	plasma membrane	38.08	38.58
CDX98992	Canola	plasma membrane	33.42	37.94
CDY39528	Canola	plasma membrane	37.56	37.86
CDX78286	Canola	plasma membrane	31.87	37.85
CDX87921	Canola	plasma membrane	20.47	37.62
CDX70021	Canola	plasma membrane	33.68	37.46
CDX81043	Canola	plasma membrane	31.61	37.42
CDY60552	Canola	plasma membrane	29.79	36.86
CDX70020	Canola	mitochondrion, plasma membrane	30.83	36.73
CDX76189	Canola	cytosol, peroxisome, plasma membrane	36.27	35.81
CDY30844	Canola	cytosol, peroxisome, plasma membrane	36.01	35.55
CDY65838	Canola	plasma membrane	35.49	35.04
CDX78204	Canola	plasma membrane	35.49	35.04
CDY65908	Canola	plasma membrane	28.24	34.6
CDY40148	Canola	plasma membrane	27.98	34.29
CDY60266	Canola	plasma membrane	31.61	34.08
CDX73525	Canola	plasma membrane	34.72	33.33
CDX98993	Canola	cytosol	26.17	31.76

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:A0A078DER2	EnsemblPlants:CDX87497	ProteinID:CDX87497	ProteinID:CDX87497.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00146486001
InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF39	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002541B6E	SEG:seg	:

Description

BnaA07g33760D

Coordinates

chrLK031850:+:909935..911804

Molecular Weight (calculated)

43030.8 Da

IEP (calculated)

8.434

GRAVY (calculated)

0.362

Length

386 amino acids

Sequence
(BLAST)

001: MEVTTEPKTQ IDEASHRNLS FSTPIAGDPS SDKLPFFRHR SRQIKRDTWL VSVFVLLQIV VFAVTMGVND CSGNSNGHCA AKLLGRFSFQ PLSENPMLGP
101: SASTFEHMGG LYWNALVEKH EIWRVLTSPW LHSGLFHLLI NLGSLIFVGI FMEQRYGPLR IAVIYFLSGL VGSLFAVLFV RNIPSICSGA AFFGLIGAML
201: SALARNWNLY TSKVSALVII LTISTVNFLI GFLPYIDNFA NIGGFISGFL LGFVLLFTPQ LRQDPPPPHK GKLFEDDMRS STRLKEMFDR PVLRIVCLLV
301: FCGILAGVLV AACWGVNLNR YCNWCRYVDC VPTRKWSCSD MTTSCEAMVS DAQLTLTCMA NGKFRIFPYT NISQARTQDL CTLVCT

Best Arabidopsis Sequence Match ( AT1G77860.2 )
(BLAST)

001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEAMVSD AQLTLTCMAN GKFRIFPFTN ISQARTEDLC TLVCS

Arabidopsis Description

KOMRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178W8L8]
SUBAcon: [nucleus,peroxisome,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.