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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013673.1-P Field mustard plasma membrane 85.67 95.39
CDY41251 Canola plasma membrane 94.9 95.21
AT4G23070.1 Thale cress plasma membrane 87.9 88.18
CDY47350 Canola plasma membrane 58.6 58.41
CDY49197 Canola plasma membrane 59.55 58.26
CDY67235 Canola plasma membrane 58.6 57.68
CDY45976 Canola plasma membrane 58.6 57.68
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 58.92 56.4
CDY66606 Canola plasma membrane 52.23 53.95
PGSC0003DMT400007890 Potato plasma membrane 56.69 53.94
TraesCS4A01G179600.1 Wheat plasma membrane 32.8 53.65
Zm00001d021231_P002 Maize plasma membrane 55.1 53.4
EER99221 Sorghum cytosol, peroxisome, plasma membrane 55.1 53.23
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 56.37 53.15
Os09t0525900-01 Rice plasma membrane 54.14 52.63
Zm00001d006179_P002 Maize plasma membrane 54.78 52.6
TraesCS5D01G320400.1 Wheat plasma membrane 53.5 52.5
HORVU5Hr1G080690.2 Barley plasma membrane 53.5 52.34
TraesCS5A01G314000.1 Wheat plasma membrane 53.5 52.17
TraesCS5B01G314900.1 Wheat plasma membrane 53.5 52.01
TraesCS7A01G269900.1 Wheat plasma membrane 53.5 52.01
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 53.82 52.0
Zm00001d052734_P002 Maize plasma membrane 53.18 51.86
Os08t0546700-01 Rice plasma membrane 53.18 51.7
CDX70020 Canola mitochondrion, plasma membrane 52.87 51.23
TraesCS7D01G270400.1 Wheat plasma membrane 53.5 51.22
Zm00001d029668_P001 Maize plasma membrane 54.46 51.2
Zm00001d029667_P001 Maize plasma membrane 54.46 51.2
TraesCS7B01G168100.1 Wheat plasma membrane 53.18 50.91
HORVU7Hr1G056630.1 Barley plasma membrane 52.55 50.61
Os10t0521900-01 Rice plasma membrane 53.5 50.6
CDX98992 Canola plasma membrane 54.46 50.29
TraesCS1D01G187500.1 Wheat plasma membrane 51.59 50.15
HORVU1Hr1G048610.3 Barley plasma membrane 51.91 50.15
TraesCS4D01G350300.1 Wheat plasma membrane 53.18 50.15
EER95642 Sorghum cytosol, golgi, plasma membrane 51.91 50.0
TraesCS5A01G526000.1 Wheat plasma membrane 52.87 50.0
TraesCS4B01G356600.1 Wheat plasma membrane 53.18 50.0
TraesCS1A01G188900.1 Wheat plasma membrane 51.91 49.85
EES11282 Sorghum cytosol 53.82 49.71
CDX70021 Canola plasma membrane 54.78 49.57
EER94630 Sorghum cytosol, golgi, plasma membrane 52.87 49.55
Zm00001d027355_P001 Maize plasma membrane 50.64 49.38
TraesCS2D01G398500.1 Wheat plasma membrane 53.18 49.26
TraesCS2B01G419100.1 Wheat plasma membrane 52.87 49.11
TraesCS1B01G196600.1 Wheat plasma membrane 50.96 49.08
Zm00001d002632_P001 Maize plasma membrane 52.23 48.24
TraesCS2A01G401000.1 Wheat plasma membrane 52.23 48.09
CDX81043 Canola plasma membrane 49.36 47.55
CDY60266 Canola plasma membrane 53.82 47.21
CDX78286 Canola plasma membrane 48.41 46.77
CDX98993 Canola cytosol 47.13 46.54
Os04t0569300-01 Rice cytosol 50.64 46.49
CDX87921 Canola plasma membrane 30.57 45.71
CDY60552 Canola plasma membrane 43.31 43.59
CDY47879 Canola plasma membrane 51.91 42.78
CDX76189 Canola cytosol, peroxisome, plasma membrane 52.87 42.46
CDY30844 Canola cytosol, peroxisome, plasma membrane 52.87 42.46
CDY39528 Canola plasma membrane 51.59 42.3
HORVU4Hr1G086150.3 Barley plastid 51.91 42.01
CDX78204 Canola plasma membrane 51.91 41.69
CDY65838 Canola plasma membrane 51.91 41.69
CDY40148 Canola plasma membrane 41.72 41.59
CDY65908 Canola plasma membrane 41.72 41.59
CDX73525 Canola plasma membrane 50.64 39.55
HORVU2Hr1G095170.6 Barley mitochondrion 43.31 36.86
CDX87497 Canola plasma membrane 39.81 32.38
CDX88394 Canola plasma membrane 37.9 30.67
HORVU0Hr1G006330.1 Barley plastid 14.33 29.61
HORVU3Hr1G029090.1 Barley plastid 14.33 29.61
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078IUM8UniProt:A0A078IUM8EnsemblPlants:CDY53134ProteinID:CDY53134
ProteinID:CDY53134.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00008666001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF65
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EE10A3
SEG:seg:::::
Description
BnaC01g41440DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUM8]
Coordinates
chrLK033169:-:46459..47808
Molecular Weight (calculated)
34593.7 Da
IEP (calculated)
8.705
GRAVY (calculated)
0.503
Length
314 amino acids
Sequence
(BLAST)
001: MLSTAEEDPE GGGTERRVGN GGVTTPDVRW TSWLIPTVVI ANVVVFISVM YANDCPHKSH RCLAKFLGRF SFESFKKNPL LGPSSSTLEK MGALAWGKIV
101: HKRQGWRLLT CMWLHAGVIH LLTNMFCVAF IGFRLEQQFG FVRVGTIYLV SGFCGSILSC LFLQNAISVG ASSALFGLLG AMLSELLINW TTYDNKGVAL
201: IMLLVIVGVN LGLGTLPPVD NFAHIGGFLG GFLLGFLLLI HPQFEWEENR VSLMPGSIVK PKYNTCQFVL CIAASIVFVV GFVTGLVLLF RGDNLNRYCN
301: WCHKLSYSVK SQWS
Best Arabidopsis Sequence Match ( AT4G23070.1 )
(BLAST)
001: MLSTAAEEDP EGGSRETNNG GETTPDMQWR SWIIPIVVIA NVVVFVVVMY YNDCPHKSHR CLAKFLGRFS FESFKSNPLL GPSSSTLEKM GALAWGKIVH
101: KRQVWRLLTC MWLHAGVIHL LANMCCVAYI GVRLEQQFGF VRVGTIYLVS GFCGSILSCL FLEDAISVGA SSALFGLLGA MLSELLINWT TYDNKGVAIV
201: MLLVIVGVNL GLGTLPPVDN FAHIGGFFGG FLLGFLLLIH PQFEWEENQV SLMPGTIVKP KYNTCQLVLC IVASIVFVAG FTSGLVILFR GDSLNRYCKW
301: CHKLSYSSKS QWT
Arabidopsis Description
RBL7Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UXE9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.