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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Predotar:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 HORVU2Hr1G084420.1 AT1G27300.1 21798944
AT5G07250.1 HORVU1Hr1G076010.1 AT3G16310.1 21798944
AT5G07250.1 HORVU3Hr1G026980.2 AT3G16310.1 21798944
AT5G07250.1 HORVU3Hr1G071060.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G006330.1 Barley plastid 100.0 100.0
TraesCS1D01G187500.1 Wheat plasma membrane 48.68 22.91
HORVU1Hr1G048610.3 Barley plasma membrane 48.68 22.77
TraesCS1B01G196600.1 Wheat plasma membrane 48.68 22.7
TraesCS1A01G188900.1 Wheat plasma membrane 48.03 22.32
Zm00001d029668_P001 Maize plasma membrane 44.08 20.06
Zm00001d029667_P001 Maize plasma membrane 44.08 20.06
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 41.45 19.81
Os10t0521900-01 Rice plasma membrane 42.76 19.58
Solyc03g026080.2.1 Tomato plasma membrane 40.79 19.5
EER94630 Sorghum cytosol, golgi, plasma membrane 42.11 19.1
CDX98992 Canola plasma membrane 42.11 18.82
CDX78286 Canola plasma membrane 40.13 18.77
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 42.76 18.73
CDX70021 Canola plasma membrane 42.76 18.73
CDX81043 Canola plasma membrane 40.13 18.71
CDY67235 Canola plasma membrane 38.82 18.5
CDY45976 Canola plasma membrane 38.82 18.5
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 38.82 18.5
Bra005930.1-P Field mustard plasma membrane 39.47 18.46
HORVU5Hr1G080690.2 Barley plasma membrane 38.82 18.38
KRH09112 Soybean plasma membrane 39.47 18.24
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 37.5 17.98
AT5G07250.1 Thale cress plasma membrane 40.79 17.92
CDX70020 Canola mitochondrion, plasma membrane 38.16 17.9
CDY47350 Canola plasma membrane 36.84 17.78
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 38.16 17.68
KRG91456 Soybean cytosol, golgi, plasma membrane 38.16 17.63
KRH38564 Soybean plasma membrane 38.16 17.58
KRH35359 Soybean cytosol, golgi, plasma membrane 38.16 17.58
Bra027622.1-P Field mustard plasma membrane 36.18 17.52
CDY66606 Canola plasma membrane 34.87 17.43
Bra019783.1-P Field mustard plasma membrane 34.87 17.43
PGSC0003DMT400007890 Potato plasma membrane 37.5 17.27
VIT_16s0100g00640.t01 Wine grape plasma membrane 36.84 17.23
HORVU7Hr1G056630.1 Barley plasma membrane 36.84 17.18
CDY49197 Canola plasma membrane 36.18 17.13
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 37.5 17.12
HORVU4Hr1G086150.3 Barley plastid 42.11 16.49
AT1G12750.4 Thale cress plasma membrane 32.24 15.96
Bra013673.1-P Field mustard plasma membrane 29.61 15.96
HORVU4Hr1G027850.1 Barley peroxisome 38.82 15.57
Bra009280.1-P Field mustard cytosol 38.16 15.55
CDY60266 Canola plasma membrane 36.18 15.36
AT4G23070.1 Thale cress plasma membrane 31.58 15.34
CDY41251 Canola plasma membrane 29.61 14.38
CDY53134 Canola plasma membrane 29.61 14.33
HORVU2Hr1G095170.6 Barley mitochondrion 33.55 13.82
CDX98993 Canola cytosol 26.32 12.58
Protein Annotations
MapMan:19.4.2.6UniProt:A0A287KK92GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:HORVU3Hr1G029090EnsemblPlants:HORVU3Hr1G029090.1PFAM:PF01694PANTHER:PTHR22936
PANTHER:PTHR22936:SF63InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI000B462404
Description
Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287KK92]
Coordinates
chrchr3H:-:132720014..132720996
Molecular Weight (calculated)
16620.7 Da
IEP (calculated)
12.242
GRAVY (calculated)
0.116
Length
152 amino acids
Sequence
(BLAST)
001: MSSLFIRDNI SVGASAALFG PLGAMLSMLF TNWTIYTKKV AAVVTLLFVI AVNLAIGILP RVDNLVPGRF RADHAPALRL GAVLRDDVLR QGRRPEIPVL
101: RVGSTRRGLG PGRHRAGSWG GDALPRGERK IALPLQVPLP QLRADRRMEL RE
Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.