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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G187500.1 Wheat plasma membrane 97.55 98.45
TraesCS1A01G188900.1 Wheat plasma membrane 96.63 96.33
HORVU1Hr1G048610.3 Barley plasma membrane 95.4 95.69
Zm00001d029668_P001 Maize plasma membrane 80.37 78.44
Zm00001d029667_P001 Maize plasma membrane 80.37 78.44
Os10t0521900-01 Rice plasma membrane 79.14 77.71
EER94630 Sorghum cytosol, golgi, plasma membrane 78.83 76.72
TraesCS4B01G356600.1 Wheat plasma membrane 68.4 66.77
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 60.74 62.26
Solyc03g026080.2.1 Tomato plasma membrane 60.43 61.95
PGSC0003DMT400007890 Potato plasma membrane 61.96 61.21
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 61.35 60.98
VIT_16s0100g00640.t01 Wine grape plasma membrane 60.74 60.92
KRH09112 Soybean plasma membrane 61.35 60.79
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 61.96 60.66
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 58.9 60.19
CDY45976 Canola plasma membrane 58.9 60.19
TraesCS5B01G314900.1 Wheat plasma membrane 59.51 60.06
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 58.28 59.94
CDY67235 Canola plasma membrane 58.59 59.87
KRH38564 Soybean plasma membrane 60.43 59.7
CDY47350 Canola plasma membrane 57.06 59.05
KRG91456 Soybean cytosol, golgi, plasma membrane 59.51 58.97
Bra027622.1-P Field mustard plasma membrane 56.75 58.92
TraesCS7B01G168100.1 Wheat plasma membrane 58.9 58.54
KRH35359 Soybean cytosol, golgi, plasma membrane 59.2 58.48
CDX98992 Canola plasma membrane 60.43 57.94
AT5G07250.1 Thale cress plasma membrane 61.35 57.8
CDY49197 Canola plasma membrane 56.75 57.63
Bra019783.1-P Field mustard plasma membrane 53.68 57.57
CDY66606 Canola plasma membrane 53.68 57.57
CDX70021 Canola plasma membrane 60.74 57.06
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 60.74 57.06
CDX78286 Canola plasma membrane 56.44 56.62
Bra005930.1-P Field mustard plasma membrane 56.44 56.62
TraesCS2B01G419100.1 Wheat plasma membrane 58.28 56.21
AT1G12750.4 Thale cress plasma membrane 52.76 56.03
CDX81043 Canola plasma membrane 55.21 55.21
CDX70020 Canola mitochondrion, plasma membrane 54.29 54.63
Bra013673.1-P Field mustard plasma membrane 44.17 51.06
CDY53134 Canola plasma membrane 49.08 50.96
CDY41251 Canola plasma membrane 48.77 50.8
AT4G23070.1 Thale cress plasma membrane 48.77 50.8
CDY60266 Canola plasma membrane 55.52 50.56
CDX98993 Canola cytosol 47.55 48.74
HORVU0Hr1G006330.1 Barley plastid 22.7 48.68
HORVU3Hr1G029090.1 Barley plastid 22.7 48.68
TraesCS4B01G141600.1 Wheat plasma membrane 54.6 46.23
Bra009280.1-P Field mustard cytosol 52.76 46.11
TraesCS3B01G085300.1 Wheat plasma membrane 51.84 45.19
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF63InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS1B01G196600EnsemblPlants:TraesCS1B01G196600.1
SEG:seg:::::
Description
No Description!
Coordinates
chr1B:-:353946193..353947624
Molecular Weight (calculated)
35446.7 Da
IEP (calculated)
9.833
GRAVY (calculated)
0.448
Length
326 amino acids
Sequence
(BLAST)
001: MAGSRRDADQ KEKAPPAAPP QQQPGREEER EWVPWIVPVF VAANVALFAV AMYANNCPAH ARGGRGGRKC VGAGFLRRFA FQPLSQNPLL GPSSATLQKL
101: GALVWDKVVH EHQGWRLVTC IWLHAGVVHL LANMLSLVLV GLRLEQQFGF VRVGVIYLVS GVGGSVMSSL FIRDNISVGA SGALFGLLGA MLSELFTNWT
201: IYTNKAAALV TLLFVIAVNL AIGILPHVDN FAHIGGFLTG FLLGFVLLMR PHYGWAQRYV LPSSVKDVGR KFLAYQWALL ALASVLVVIG LAVGMAMLFR
301: GVNGNEHCEW CHYLSCVPTA RWSCGK
Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.