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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, plasma membrane
iPSORT:plastid
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G398500.1 Wheat plasma membrane 98.52 98.23
TraesCS2A01G401000.1 Wheat plasma membrane 97.63 96.77
TraesCS4A01G179600.1 Wheat plasma membrane 52.07 91.67
EES11282 Sorghum cytosol 79.88 79.41
Zm00001d002632_P001 Maize plasma membrane 79.29 78.82
Os04t0569300-01 Rice cytosol 75.74 74.85
HORVU2Hr1G095170.6 Barley mitochondrion 76.92 70.46
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 60.65 62.5
PGSC0003DMT400007890 Potato plasma membrane 58.58 60.0
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 55.92 59.62
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 58.58 59.46
KRH09112 Soybean plasma membrane 57.4 58.97
TraesCS5B01G314900.1 Wheat plasma membrane 56.21 58.82
Solyc03g026080.2.1 Tomato plasma membrane 55.03 58.49
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 55.03 58.49
KRH38564 Soybean plasma membrane 57.1 58.48
TraesCS1B01G196600.1 Wheat plasma membrane 56.21 58.28
VIT_16s0100g00640.t01 Wine grape plasma membrane 55.92 58.15
CDY47350 Canola plasma membrane 54.14 58.1
CDY45976 Canola plasma membrane 54.73 57.99
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 54.73 57.99
Bra027622.1-P Field mustard plasma membrane 53.55 57.64
TraesCS7B01G168100.1 Wheat plasma membrane 55.92 57.62
CDY67235 Canola plasma membrane 54.14 57.37
AT1G12750.4 Thale cress plasma membrane 52.07 57.33
KRG91456 Soybean cytosol, golgi, plasma membrane 55.62 57.14
CDY49197 Canola plasma membrane 54.14 57.01
CDY66606 Canola plasma membrane 50.59 56.25
Bra019783.1-P Field mustard plasma membrane 50.59 56.25
KRH35359 Soybean cytosol, golgi, plasma membrane 54.73 56.06
TraesCS4B01G356600.1 Wheat plasma membrane 54.73 55.39
AT5G07250.1 Thale cress plasma membrane 55.33 54.05
Bra005930.1-P Field mustard plasma membrane 51.78 53.85
CDX78286 Canola plasma membrane 51.78 53.85
AT4G23070.1 Thale cress plasma membrane 49.11 53.04
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 54.44 53.03
CDX98992 Canola plasma membrane 53.25 52.94
CDY53134 Canola plasma membrane 49.11 52.87
Bra013673.1-P Field mustard plasma membrane 44.08 52.84
CDX81043 Canola plasma membrane 50.89 52.76
CDX70021 Canola plasma membrane 54.14 52.74
CDY41251 Canola plasma membrane 48.82 52.72
CDX70020 Canola mitochondrion, plasma membrane 49.41 51.54
CDY60266 Canola plasma membrane 52.66 49.72
CDX98993 Canola cytosol 45.27 48.11
TraesCS4B01G141600.1 Wheat plasma membrane 51.48 45.19
Bra009280.1-P Field mustard cytosol 48.52 43.97
TraesCS3B01G085300.1 Wheat plasma membrane 47.63 43.05
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF31InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS2B01G419100EnsemblPlants:TraesCS2B01G419100.1
SEG:seg:::::
Description
No Description!
Coordinates
chr2B:-:600707872..600709312
Molecular Weight (calculated)
36657.9 Da
IEP (calculated)
8.820
GRAVY (calculated)
0.371
Length
338 amino acids
Sequence
(BLAST)
001: MSNPDVEAAG PARAATTGIK PPPGRYYAGG DGQHAPAAPF YYGQEAERER QHHTWLVPVV VLANVAMFIV VMYYNDCPRN GRGADCLGGG FLRRFSFQPL
101: KENPLFGPSS ATLGKYGGLD RYKVVHGDQA WRLETATWLH AGLIHLGANM ISLIFVGVRL EQQFGFWKVG LVYLFSGLGG SVLSVLFIRN GVSVGASGAL
201: FGLLGAMLSE LITNWTIYTN RLAAMANLII IAAINLALGI LPHVDNFAHI GGFLTGFLLG FVLLIQPRFG WLEQPFGGKT KSKYTACQIV LLIVALLLAI
301: AGFAVGLLMV FRGVNGNDHC SWCHYLTCVP TSHWKCDN
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.